RNA–Protein interactions for RNA: ENST00000566409.1

FANCA-220, Transcript of FA complementation group A, humanhuman

TSL 1 (best)

Gene FANCA, Length 395 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FANCA-220ENST00000566409 ADNP2Q6IQ32 1131 aa13.78□□□□□ -0.2
FANCA-220ENST00000566409 RPUSD3Q6P087 351 aaKnown RBP13.78□□□□□ -0.2
FANCA-220ENST00000566409 ABHD13Q7L211 337 aa13.78□□□□□ -0.2
FANCA-220ENST00000566409 VN1R5Q7Z5H4 357 aa13.78□□□□□ -0.2
FANCA-220ENST00000566409 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.78□□□□□ -0.2
FANCA-220ENST00000566409 FAR1Q8WVX9 515 aa13.78□□□□□ -0.2
FANCA-220ENST00000566409 KIAA1191Q96A73 305 aa13.78□□□□□ -0.2
FANCA-220ENST00000566409 TAAR6Q96RI8 345 aa13.78□□□□□ -0.2
FANCA-220ENST00000566409 STMN3Q9NZ72 180 aa13.78□□□□□ -0.2
FANCA-220ENST00000566409 C19orf25Q9UFG5 118 aaPredicted RBP13.78□□□□□ -0.2
FANCA-220ENST00000566409 PTBP2Q9UKA9 531 aaKnown RBP13.78□□□□□ -0.2
FANCA-220ENST00000566409 ZNF490Q9ULM2 529 aaPredicted RBP13.78□□□□□ -0.2
FANCA-220ENST00000566409 DYTNA2CJ06 578 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 LRIT2A6NDA9 550 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 WIPF3A6NGB9 483 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 A8MUI8 341 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 FAM227AF5H4B4 570 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 GP1BBP13224 206 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 CD22P20273 847 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 HNRNPH1P31943 449 aaKnown RBP13.77□□□□□ -0.21
FANCA-220ENST00000566409 AGTR2P50052 363 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 ST13P50502 369 aaKnown RBP13.77□□□□□ -0.21
FANCA-220ENST00000566409 ZNF33BQ06732 778 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 TOR1AIP1Q5JTV8 583 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 CDKL4Q5MAI5 379 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 ZNF324BQ6AW86 544 aaPredicted RBP13.77□□□□□ -0.21
FANCA-220ENST00000566409 SULT1C3Q6IMI6 304 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 PAPD4Q6PIY7 484 aaKnown RBP13.77□□□□□ -0.21
FANCA-220ENST00000566409 TMIGD1Q6UXZ0 262 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 ISCA2Q86U28 154 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 PDPRQ8NCN5 879 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 ST6GALNAC3Q8NDV1 305 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 SSC4DQ8WTU2 575 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 C16orf45Q96MC5 204 aaPredicted RBP13.77□□□□□ -0.21
FANCA-220ENST00000566409 SLX1AQ9BQ83 275 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 RNF32Q9H0A6 362 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 NT5DC2Q9H857 520 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 AGPAT4Q9NRZ5 378 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 IGSF5Q9NSI5 407 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 DNAJC11Q9NVH1 559 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 WWOXQ9NZC7 414 aa13.77□□□□□ -0.21
FANCA-220ENST00000566409 IGKV3D-11A0A0A0MRZ8 115 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 TRAV17A0A0B4J275 112 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 A0A0G2JN53 185 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 STK16O75716 305 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 STX2P32856 288 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 SRSF11Q05519 484 aaKnown RBP13.76□□□□□ -0.21
FANCA-220ENST00000566409 RUNX2Q13950 521 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 DOC2AQ14183 400 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 HIST2H2BCQ6DN03 193 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 CA13Q8N1Q1 262 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 TCAIMQ8N3R3 496 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 M1APQ8TC57 530 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 MS4A6EQ96DS6 147 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 PTCHD1Q96NR3 888 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 ATOH8Q96SQ7 321 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 ALG9Q9H6U8 611 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 MMP25Q9NPA2 562 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 GPRC5BQ9NZH0 403 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 CLDN16Q9Y5I7 305 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 MYO7BQ6PIF6 2116 aa13.76□□□□□ -0.21
FANCA-220ENST00000566409 OR5H15A6NDH6 313 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 PRMT3O60678 531 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 H2AFYO75367 372 aaKnown RBP13.75□□□□□ -0.21
FANCA-220ENST00000566409 WISP2O76076 250 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 URI1O94763 535 aaPredicted RBP13.75□□□□□ -0.21
FANCA-220ENST00000566409 LDLRP01130 860 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 EDN3P14138 238 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 TFEBP19484 476 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 MAOAP21397 527 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 JAK1P23458 1154 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 OR4D2P58180 307 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 SLC26A5P58743 744 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 AP2B1P63010 937 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 SKP1P63208 163 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 BTN3A2P78410 334 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 CKAP4Q07065 602 aaKnown RBP13.75□□□□□ -0.21
FANCA-220ENST00000566409 ACTN3Q08043 901 aaPredicted RBP13.75□□□□□ -0.21
FANCA-220ENST00000566409 SLMAPQ14BN4 828 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 EXT1Q16394 746 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 ADPRMQ3LIE5 342 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 ACER2Q5QJU3 275 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 ABHD17BQ5VST6 288 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 NIPAL1Q6NVV3 410 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 C8orf74Q6P047 294 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 QSOX2Q6ZRP7 698 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 CRLF3Q8IUI8 442 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 CENPLQ8N0S6 344 aaPredicted RBP13.75□□□□□ -0.21
FANCA-220ENST00000566409 BEST3Q8N1M1 668 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 NOA1Q8NC60 698 aaKnown RBP13.75□□□□□ -0.21
FANCA-220ENST00000566409 EXT2Q93063 718 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 NXNL1Q96CM4 212 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 WDR34Q96EX3 536 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 MAGEB10Q96LZ2 347 aaPredicted RBP13.75□□□□□ -0.21
FANCA-220ENST00000566409 QRFPRQ96P65 431 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 LPAR4Q99677 370 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 CAPS2Q9BXY5 557 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 CD244Q9BZW8 370 aa13.75□□□□□ -0.21
FANCA-220ENST00000566409 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.75□□□□□ -0.21
FANCA-220ENST00000566409 RHBGQ9H310 441 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms