RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 FCRL1Q96LA6 429 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 IL4I1Q96RQ9 567 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 FAM129BQ96TA1 746 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 VN1R3Q9BXE9 311 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 EMILIN2Q9BXX0 1053 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 SPATA6Q9NWH7 488 aaPredicted RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 POFUT2Q9Y2G5 429 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 NOX1Q9Y5S8 564 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 ARHGEF33A8MVX0 844 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 GREM1O60565 184 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 MFN2O95140 757 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 C6orf47O95873 294 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 APOA1P02647 267 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 SOX6P35712 828 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 PREPP48147 710 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 TGM4P49221 684 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 PRIM2P49643 509 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 DEFA1P59665 94 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 DEFA3P59666 94 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 TCTN1Q2MV58 587 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 IFI44LQ53G44 452 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 IER5LQ5T953 404 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 OTOP2Q7RTS6 562 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 DNAJB7Q7Z6W7 309 aaPredicted RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 CPA6Q8N4T0 437 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 OR4C15Q8NGM1 316 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 WDR36Q8NI36 951 aaKnown RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 MYLIPQ8WY64 445 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 NEDD4LQ96PU5 975 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 OR4K3Q96R72 315 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 ZNF556Q9HAH1 456 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 DDX28Q9NUL7 540 aaKnown RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 PDZK1P1A8MUH7 402 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 ARHGAP33O14559 1287 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 KRT8P05787 483 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 C1SP09871 688 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 CKMT1AP12532 417 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 ANXA8P13928 327 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 S100A1P23297 94 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 FEN1P39748 380 aaKnown RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 SOX3P41225 446 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 SLC15A1P46059 708 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 MVDP53602 400 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 OR2B6P58173 313 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 FBXO43Q4G163 708 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 ZMAT1Q5H9K5 638 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 USP45Q70EL2 814 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 NRARPQ7Z6K4 114 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 HUS1BQ8NHY5 278 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 VOPP1Q96AW1 172 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 NACC2Q96BF6 587 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 CNPPD1Q9BV87 410 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 B4GALT6Q9UBX8 382 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 EXO1Q9UQ84 846 aaKnown RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 NINQ8N4C6 2090 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 SCN8AQ9UQD0 1980 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 MKI67P46013 3256 aaKnown RBP12.67□□□□□ -0.38
CLN3-210ENST00000563874 PRAMEF33A0A0G2JMD5 474 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 NPIPB8E9PQR5 432 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 PRAMEF10O60809 474 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 BDKRB1P46663 353 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 CCL23P55773 120 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 RPS13P62277 151 aaKnown RBP12.67□□□□□ -0.38
CLN3-210ENST00000563874 MADCAM1Q13477 382 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 SCARB2Q14108 478 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 LEXMQ3ZCV2 418 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 MLIPQ5VWP3 458 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 LIPJQ5W064 366 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 DEPDC4Q8N2C3 294 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 AQP11Q8NBQ7 271 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 DMRTB1Q96MA1 342 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 SLC35A5Q9BS91 424 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 TRPV5Q9NQA5 729 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 STOML2Q9UJZ1 356 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 A3GALT2U3KPV4 340 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 CASP8AP2Q9UKL3 1982 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 GPX5O75715 221 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 TEAD4Q15561 434 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 SSX1Q16384 188 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 LRRC26Q2I0M4 334 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 AGAP6Q5VW22 663 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 TTC23LQ6PF05 361 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 AGTRAPQ6RW13 159 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 PTCHD4Q6ZW05 846 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 RNF180Q86T96 592 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 CCDC190Q86UF4 302 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 DENND6BQ8NEG7 585 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 OR7G3Q8NG95 312 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 C11orf24Q96F05 449 aaPredicted RBP12.67□□□□□ -0.38
CLN3-210ENST00000563874 AGAP4Q96P64 663 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 ZIC5Q96T25 663 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 RAD9AQ99638 391 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 SUV39H2Q9H5I1 410 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 ZNF334Q9HCZ1 680 aaPredicted RBP12.67□□□□□ -0.38
CLN3-210ENST00000563874 C11orf16Q9NQ32 467 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 BTNL2Q9UIR0 455 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 MKLN1Q9UL63 735 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 RAB23Q9ULC3 237 aa12.67□□□□□ -0.38
CLN3-210ENST00000563874 IGLV3-16A0A075B6K0 115 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 H3BQ06 376 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms