RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ZNF835Q9Y2P0 537 aa10.91□□□□□ -0.66
USP3-220ENST00000561381 PSAT1Q9Y617 370 aa10.91□□□□□ -0.66
USP3-220ENST00000561381 GTF3C1Q12789 2109 aa10.91□□□□□ -0.66
USP3-220ENST00000561381 NCOA6Q14686 2063 aaPredicted RBP10.91□□□□□ -0.66
USP3-220ENST00000561381 CSMD1Q96PZ7 3565 aa10.91□□□□□ -0.66
USP3-220ENST00000561381 PABPN1LA6NDY0 278 aaKnown RBP10.9□□□□□ -0.66
USP3-220ENST00000561381 NPEPPSL1A6NEC2 478 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 A8MUA0 341 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 CDC7O00311 574 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 PRMT3O60678 531 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 CD46P15529 392 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 SAT1P21673 171 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 JAK1P23458 1154 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 TPP2P29144 1249 aaPredicted RBP10.9□□□□□ -0.66
USP3-220ENST00000561381 AHRP35869 848 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 CASP6P55212 293 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 TAS2R50P59544 299 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 HSF1Q00613 529 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 RGS1Q08116 209 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 ZNF460Q14592 562 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 NAA30Q147X3 362 aaPredicted RBP10.9□□□□□ -0.66
USP3-220ENST00000561381 MAPKAPK3Q16644 382 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 PPP1R3AQ16821 1122 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 C18orf21Q32NC0 220 aaPredicted RBP10.9□□□□□ -0.66
USP3-220ENST00000561381 RNFT1Q5M7Z0 435 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 SLC25A25Q6KCM7 469 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 FAM45BPQ6NSW5 357 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 RPTNQ6XPR3 784 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 ABHD13Q7L211 337 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 TMPRSS11BQ86T26 416 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 THOC6Q86W42 341 aaKnown RBP10.9□□□□□ -0.66
USP3-220ENST00000561381 RPS19BP1Q86WX3 136 aaKnown RBP10.9□□□□□ -0.66
USP3-220ENST00000561381 ZNF227Q86WZ6 799 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 SPPL2CQ8IUH8 684 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 SIAH3Q8IW03 269 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 TMEM178AQ8NBL3 297 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 FAM45AQ8TCE6 357 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 THAP3Q8WTV1 239 aaPredicted RBP10.9□□□□□ -0.66
USP3-220ENST00000561381 ATL1Q8WXF7 558 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 SLCO2A1Q92959 643 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 MAGED4Q96JG8 741 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 TRIM51Q9BSJ1 452 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 NAT9Q9BTE0 207 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 SLC6A16Q9GZN6 736 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 NECTIN3Q9NQS3 549 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 TRMT1Q9NXH9 659 aaKnown RBP10.9□□□□□ -0.66
USP3-220ENST00000561381 SLC22A14Q9Y267 594 aa10.9□□□□□ -0.66
USP3-220ENST00000561381 FBN2P35556 2912 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 IGKV3D-11A0A0A0MRZ8 115 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 SAGE2PA6NJ88 616 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 C19orf84I3L1E1 186 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 CES2O00748 559 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 ASNA1O43681 348 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 SLC25A12O75746 678 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 ENO2P09104 434 aaPredicted RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 SMIM10L1P0DMW3 83 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 ESRRAP11474 423 aaPredicted RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 ZNF37AP17032 561 aaPredicted RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 MLF1P58340 268 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 RBBP5Q15291 538 aaKnown RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 KRTCAP3Q53RY4 240 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 TOR1AIP1Q5JTV8 583 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 STEAP4Q687X5 459 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 MTFR2Q6P444 385 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 NXPE4Q6UWF7 544 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 C3P1Q6ZMU1 363 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 Q6ZPB1 254 aaPredicted RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 QSOX2Q6ZRP7 698 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 ZC3HC1Q86WB0 502 aaKnown RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 ANKMY2Q8IV38 441 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 CHERPQ8IWX8 916 aaKnown RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 KLHL7Q8IXQ5 586 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 LGI4Q8N135 537 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 PDIK1LQ8N165 341 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 TBC1D19Q8N5T2 526 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 CPSF7Q8N684 471 aaKnown RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 NFAM1Q8NET5 270 aaPredicted RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 CREB3L4Q8TEY5 395 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 ANKRD49Q8WVL7 239 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 PDLIM5Q96HC4 596 aaKnown RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 SMIM10Q96HG1 83 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 PELI2Q9HAT8 420 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 CORO1CQ9ULV4 474 aaPredicted RBP10.89□□□□□ -0.67
USP3-220ENST00000561381 DYRK1BQ9Y463 629 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 TEX264Q9Y6I9 313 aa10.89□□□□□ -0.67
USP3-220ENST00000561381 CACNA1CQ13936 2221 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 A0A0G2JN53 185 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 TCRBV16S1A1N1A0A5B0 115 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 TP73O15350 636 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 NME2P1O60361 137 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 PIAS1O75925 651 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 RNH1P13489 461 aaKnown RBP10.88□□□□□ -0.67
USP3-220ENST00000561381 NME2P22392 152 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 GDF5P43026 501 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 ITGA8P53708 1063 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 TAS2R39P59534 338 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 SKP1P63208 163 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 BTN3A2P78410 334 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 FASTKD3Q14CZ7 662 aaKnown RBP10.88□□□□□ -0.67
USP3-220ENST00000561381 MORF4L2Q15014 288 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms