RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SP140Q13342 867 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 KIR2DS5Q14953 304 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 NR0B2Q15466 257 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ZNF750Q32MQ0 723 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ZC3H12BQ5HYM0 836 aaKnown RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ALG1LQ6GMV1 187 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 CYS1Q717R9 158 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ABHD13Q7L211 337 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 DHFR2Q86XF0 187 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 TREML1Q86YW5 311 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 SPPL2CQ8IUH8 684 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 MCATQ8IVS2 390 aaKnown RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 CADM2Q8N3J6 435 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 TMEM105Q8N8V8 129 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 C10orf82Q8WW14 230 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ARSGQ96EG1 525 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ZNF317Q96PQ6 595 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ZNF382Q96SR6 550 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 TIMM29Q9BSF4 260 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 BTBD10Q9BSF8 475 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 TRIM45Q9H8W5 580 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 TNFRSF12AQ9NP84 129 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 GEMIN8Q9NWZ8 242 aaKnown RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 TMCO1Q9UM00 188 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 RTTNQ86VV8 2226 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 AKAP6Q13023 2319 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 MYO16Q9Y6X6 1858 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 IGHV3-20A0A0C4DH32 117 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 GAPDHSO14556 408 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 CHUKO15111 745 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 CASC3O15234 703 aaKnown RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 AP1G1O43747 822 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 MTHFD2P13995 350 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ALOX12P18054 663 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 CCND1P24385 295 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 HSD17B2P37059 387 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 XCR1P46094 333 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 DCDC1P59894 354 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 AP2B1P63010 937 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 PRDX1Q06830 199 aaKnown RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ILF2Q12905 390 aaKnown RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 PLK5Q496M5 336 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 IYDQ6PHW0 289 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 UNC5DQ6UXZ4 953 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 RINLQ6ZS11 566 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 RNF44Q7L0R7 432 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 MARCH9Q86YJ5 346 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 PLPP6Q8IY26 295 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 SLC35F3Q8IY50 421 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 PRR22Q8IZ63 422 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 FAM9CQ8IZT9 166 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 MMP21Q8N119 569 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ATG16L2Q8NAA4 619 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 FAM13CQ8NE31 585 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ZFP28Q8NHY6 868 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 AGAP11Q8TF27 550 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 DEPDC7Q96QD5 511 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 DPH2Q9BQC3 489 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ING2Q9H160 280 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 RMI1Q9H9A7 625 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 SLC40A1Q9NP59 571 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 RIMKLBQ9ULI2 386 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 NAALAD2Q9Y3Q0 740 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 FNDC1Q4ZHG4 1894 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 MDC1Q14676 2089 aaKnown RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ARHGEF17Q96PE2 2063 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 LOC105369274A0A096LPK9 316 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 LOC102723532A0A0G2JNH3 316 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SLC5A10A0PJK1 596 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 FAM227AF5H4B4 570 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 UBFD1O14562 309 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 TAPBPO15533 448 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 PEX1O43933 1283 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 GDF9O60383 454 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 PIAS2O75928 621 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 FUCA1P04066 466 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 IL6P05231 212 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 PGRP06401 933 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 HEXBP07686 556 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ITIH1P19827 911 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 PSMA4P25789 261 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SLC26A3P40879 764 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ADARP55265 1226 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 FOXC1Q12948 553 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 EIF2B5Q13144 721 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 NRF1Q16656 503 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 FAM214AQ32MH5 1076 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ZIK1Q3SY52 487 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 C14orf28Q4W4Y0 310 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 REP15Q6BDI9 236 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 TMEM107Q6UX40 140 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 TMEM64Q6YI46 380 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ZNF765Q7L2R6 523 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 R3HCC1LQ7Z5L2 792 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 NLGN4XQ8N0W4 816 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 OR4N4Q8N0Y3 316 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 NAGSQ8N159 534 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 GHDCQ8N2G8 530 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 DENND6BQ8NEG7 585 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 OR2T12Q8NG77 320 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms