RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TIAF1O95411 115 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 PCNAP12004 261 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 CDH1P12830 882 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 POLR2CP19387 275 aaPredicted RBP11.25□□□□□ -0.61
LDLR-212ENST00000560467 GSTM2P28161 218 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 ARL4DP49703 201 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 IRX1P78414 480 aaPredicted RBP11.25□□□□□ -0.61
LDLR-212ENST00000560467 SF3A3Q12874 501 aaKnown RBP eCLIP11.25□□□□□ -0.612e-6■■□□□ 12.5
LDLR-212ENST00000560467 MAD2L1Q13257 205 aaPredicted RBP11.25□□□□□ -0.61
LDLR-212ENST00000560467 RBBP5Q15291 538 aaKnown RBP11.25□□□□□ -0.61
LDLR-212ENST00000560467 RPS6KA2Q15349 733 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 ZRSR2Q15696 482 aaKnown RBP11.25□□□□□ -0.61
LDLR-212ENST00000560467 SPDYAQ5MJ70 313 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 FRG2Q64ET8 278 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 CPZQ66K79 652 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 CLEC6AQ6EIG7 209 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 GRHL2Q6ISB3 625 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 EPGNQ6UW88 154 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 TMIGD1Q6UXZ0 262 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 SLCO4C1Q6ZQN7 724 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 FAM92BQ6ZTR7 304 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 LMNTD1Q8N9Z9 388 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 STON2Q8WXE9 905 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 ZUFSPQ96AP4 578 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 TUBGCP3Q96CW5 907 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 PPP3R2Q96LZ3 170 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 LRRC37BQ96QE4 947 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 FRG2BQ96QU4 278 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 CCDC28BQ9BUN5 200 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 ZNF768Q9H5H4 540 aaKnown RBP11.25□□□□□ -0.61
LDLR-212ENST00000560467 TCF7L2Q9NQB0 619 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 ACTR10Q9NZ32 417 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 AHSPQ9NZD4 102 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 ASB1Q9Y576 335 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 TIMM22Q9Y584 194 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 KRT87PA6NCN2 255 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 OR5K3A6NET4 321 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 TTLL8A6PVC2 850 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 H0YIV9 168 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 H7BY64 318 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 MANBAO00462 879 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 PPP6CO00743 305 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 FFAR3O14843 346 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 GPR42O15529 346 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 LINC00032P0C843 101 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 HSD3B1P14060 373 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 ALOX15P16050 662 aaPredicted RBP11.24□□□□□ -0.61
LDLR-212ENST00000560467 NCF2P19878 526 aaPredicted RBP11.24□□□□□ -0.61
LDLR-212ENST00000560467 HSD3B2P26439 372 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 MAPK1P28482 360 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 CAPZBP47756 277 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 IDH3AP50213 366 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 STX1BP61266 288 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 PPP1CAP62136 330 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 CHAF1BQ13112 559 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 TRAF3Q13114 568 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 SLBPQ14493 270 aaKnown RBP eCLIP11.24□□□□□ -0.61
LDLR-212ENST00000560467 IL11RAQ14626 422 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 ATP6AP1LQ52LC2 224 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 CACHD1Q5VU97 1274 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 CES4AQ5XG92 561 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 LETMD1Q6P1Q0 360 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 PRSS42Q7Z5A4 293 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 LRRC56Q8IYG6 542 aaPredicted RBP11.24□□□□□ -0.61
LDLR-212ENST00000560467 FAM9CQ8IZT9 166 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 ZNF655Q8N720 491 aaPredicted RBP11.24□□□□□ -0.61
LDLR-212ENST00000560467 EFCAB3Q8N7B9 438 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 ABHD11Q8NFV4 315 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 OR2L3Q8NG85 312 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 OR2A1Q8NGT9 310 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 RFWD2Q8NHY2 731 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 CPT1CQ8TCG5 803 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 ACTRT2Q8TDY3 377 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 WDR34Q96EX3 536 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 PPP1R36Q96LQ0 422 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 PRAP1Q96NZ9 151 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 OR4K3Q96R72 315 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 TUBB6Q9BUF5 446 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 NLNQ9BYT8 704 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 ACTL8Q9H568 366 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 NT5DC2Q9H857 520 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 MEAF6Q9HAF1 191 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.24□□□□□ -0.61
LDLR-212ENST00000560467 HEY2Q9UBP5 337 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 KCND3Q9UK17 655 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 VPS4AQ9UN37 437 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 EIF3LQ9Y262 564 aaKnown RBP11.24□□□□□ -0.61
LDLR-212ENST00000560467 DNAJC15Q9Y5T4 150 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 PIKFYVEQ9Y2I7 2098 aa11.24□□□□□ -0.61
LDLR-212ENST00000560467 A1L4Q6 167 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 TMEM233B4DJY2 109 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 BTN3A3O00478 584 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 PIP5K1BO14986 540 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 TOX3O15405 576 aaPredicted RBP11.23□□□□□ -0.61
LDLR-212ENST00000560467 OR1F1O43749 312 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 SEMA7AO75326 666 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 FGF5P12034 268 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 LBPP18428 481 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 CDH3P22223 829 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 PTX3P26022 381 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms