RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SH2D4BQ5SQS7 431 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 ZNF385CQ66K41 422 aaPredicted RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 ZNF517Q6ZMY9 492 aaPredicted RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 PAGE2Q7Z2X7 111 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 VN1R5Q7Z5H4 357 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 PROSER1Q86XN7 944 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 CLYBLQ8N0X4 340 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 METTL27Q8N6F8 245 aaPredicted RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 SLC38A9Q8NBW4 561 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 UTP15Q8TED0 518 aaKnown RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 NKD1Q969G9 470 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 RGMAQ96B86 450 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 MS4A6EQ96DS6 147 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 MOCOSQ96EN8 888 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 QRFPRQ96P65 431 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 MACROD1Q9BQ69 325 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 TBCDQ9BTW9 1192 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 SPRY4Q9C004 299 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 CHST8Q9H2A9 424 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 SYNPO2LQ9H987 977 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 ACSS2Q9NR19 701 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 INTS9Q9NV88 658 aaKnown RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 C14orf105Q9NVL8 296 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 ZNF282Q9UDV7 671 aaPredicted RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 CROTQ9UKG9 612 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 MAP4K5Q9Y4K4 846 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 SPACA6W5XKT8 324 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 SEC16AO15027 2179 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 TEX51A0A1B0GUA7 166 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 MAGEB17A8MXT2 336 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 PSMD12O00232 456 aaPredicted RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 UBFD1O14562 309 aaKnown RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 KLF11O14901 512 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 KLK10O43240 276 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 TLX3O43711 291 aaPredicted RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 ONECUT2O95948 504 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 PDYNP01213 254 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 RAB40ALP0C0E4 278 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 CHN1P15882 459 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 IL10P22301 178 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 JAK1P23458 1154 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 EIF2S3P41091 472 aaKnown RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 FOLR3P41439 243 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 SLC1A6P48664 564 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 NEK2P51955 445 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 PLA2G16P53816 162 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 WDR4P57081 412 aaKnown RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 RAB8AP61006 207 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 MC1RQ01726 317 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 HYAL2Q12891 473 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 STX3Q13277 289 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 SGO1Q5FBB7 561 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 DEPDC1Q5TB30 811 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 KANK2Q63ZY3 851 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 ADNP2Q6IQ32 1131 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 ABHD17CQ6PCB6 329 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 FAM198BQ6UWH4 519 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 TIPARPQ7Z3E1 657 aaKnown RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 ARHGEF39Q8N4T4 335 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 ZSCAN1Q8NBB4 408 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 OR9A4Q8NGU2 314 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 LRRC8CQ8TDW0 803 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 CT55Q8WUE5 264 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 DCBLD2Q96PD2 775 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 KCNA7Q96RP8 456 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 SERINC2Q96SA4 455 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 CCT7Q99832 543 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 YIPF2Q9BWQ6 316 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 NPLQ9BXD5 320 aaPredicted RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 SLC26A1Q9H2B4 701 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 MANSC1Q9H8J5 431 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 WDR54Q9H977 334 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 MKKSQ9NPJ1 570 aaPredicted RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 TRPC4Q9UBN4 977 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 ZNF225Q9UK10 706 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 SLC12A4Q9UP95 1085 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 MRPS33Q9Y291 106 aaKnown RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 FIS1Q9Y3D6 152 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 RAP2CQ9Y3L5 183 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 NAALAD2Q9Y3Q0 740 aa9.56□□□□□ -0.88
USP3-216ENST00000559873 ANKRD11Q6UB99 2663 aaPredicted RBP9.56□□□□□ -0.88
USP3-216ENST00000559873 A0A1B0GTL3 188 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 ARHGAP10A1A4S6 786 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 RGS14O43566 566 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 FOXS1O43638 330 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 RDH16O75452 317 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 SCELO95171 688 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 TGFB1P01137 390 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 IGHEP01854 428 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 CHRNGP07510 517 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 CYC1P08574 325 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 FGF4P08620 206 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 HNRNPH1P31943 449 aaKnown RBP9.55□□□□□ -0.88
USP3-216ENST00000559873 CCR10P46092 362 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 OR1D4P47884 311 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 BTN3A2P78410 334 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 BST1Q10588 318 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 SLC9A5Q14940 896 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 SPIN4Q56A73 249 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms