RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 IQANK1A0A1B0GTG1 560 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 EXOC1LA0A1B0GW35 172 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 NCF1BA6NI72 391 aaPredicted RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 NCF1CA8MVU1 366 aaPredicted RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 I3L1I5 382 aaPredicted RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 ACSL3O95573 720 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 SERPINA6P08185 405 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 F7P08709 466 aaPredicted RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 ABHD2P08910 425 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 C8orf89P0DMQ9 161 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 C1GALT1C1LP0DN25 315 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 GFAPP14136 432 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 NCF1P14598 390 aaPredicted RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 CD1DP15813 335 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 ACADSP16219 412 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 EPB42P16452 691 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 ALOX12P18054 663 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 DRD4P21917 467 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 GGT5P36269 586 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 RANBP1P43487 201 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 SOX8P57073 446 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 GPX6P59796 221 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 REEP5Q00765 189 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 TIAL1Q01085 375 aaKnown RBP eCLIP8.22□□□□□ -1.09
USP3-208ENST00000558285 IRF8Q02556 426 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 ZRSR2Q15696 482 aaKnown RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 PPP1R3AQ16821 1122 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 HKDC1Q2TB90 917 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 MINDY4Q4G0A6 757 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 TMEM214Q6NUQ4 689 aaKnown RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 TRIM40Q6P9F5 258 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 PCSK4Q6UW60 755 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 TMIGD1Q6UXZ0 262 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 MBOAT1Q6ZNC8 495 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 NDUFAF7Q7L592 441 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 CEP97Q8IW35 865 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 KLHDC8AQ8IYD2 350 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 METTL27Q8N6F8 245 aaPredicted RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 PDPRQ8NCN5 879 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 NT5CQ8TCD5 201 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 NEIL2Q969S2 332 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 PYCR2Q96C36 320 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 RHBDF1Q96CC6 855 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 PTCD3Q96EY7 689 aaKnown RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 C10orf90Q96M02 699 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 RAB3IPQ96QF0 476 aaPredicted RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 TUBB6Q9BUF5 446 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 LHPPQ9H008 270 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 CCDC134Q9H6E4 229 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 SOX17Q9H6I2 414 aaPredicted RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 AKIRIN1Q9H9L7 192 aaPredicted RBP8.22□□□□□ -1.09
USP3-208ENST00000558285 ZNF180Q9UJW8 692 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 FBXL4Q9UKA2 621 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 TP53TG5Q9Y2B4 290 aa8.22□□□□□ -1.09
USP3-208ENST00000558285 A0A096LPK6 155 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 DYTNA2CJ06 578 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 BLACEA4D250 179 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 KRT87PA6NCN2 255 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 CXorf49A8MYA2 514 aaPredicted RBP8.21□□□□□ -1.09
USP3-208ENST00000558285 IDSB3KWA1 339 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 CLDN4O14493 209 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 CDK2AP1O14519 115 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 SUV39H1O43463 412 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 HCRTR1O43613 425 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 CCNT2O60583 730 aaKnown RBP8.21□□□□□ -1.09
USP3-208ENST00000558285 DIAPH2O60879 1101 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 CLEC3AO75596 197 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 CEACAM4O75871 244 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 PRB1P04280 392 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 SNRPAP09012 282 aaKnown RBP8.21□□□□□ -1.09
USP3-208ENST00000558285 TFEBP19484 476 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 TAC1P20366 129 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 ATP6V1C1P21283 382 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 TPP2P29144 1249 aaPredicted RBP8.21□□□□□ -1.09
USP3-208ENST00000558285 BCL6P41182 706 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 TAS2R50P59544 299 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 KCNC4Q03721 635 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 KLC1Q07866 573 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 COL9A2Q14055 689 aaPredicted RBP8.21□□□□□ -1.09
USP3-208ENST00000558285 ZNF460Q14592 562 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 TAF11Q15544 211 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 TBCCQ15814 346 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 EXT1Q16394 746 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 XKR6Q5GH73 641 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 MROH9Q5TGP6 573 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 LCN10Q6JVE6 187 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 PPP1R32Q7Z5V6 425 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 KIRREL3Q8IZU9 778 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 DEPDC4Q8N2C3 294 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 OR51Q1Q8NH59 317 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 SUN3Q8TAQ9 357 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 EXT2Q93063 718 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 UBXN10Q96LJ8 280 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 SPSB2Q99619 263 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 MCMBPQ9BTE3 642 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 NPLQ9BXD5 320 aaPredicted RBP8.21□□□□□ -1.09
USP3-208ENST00000558285 CDC42EP4Q9H3Q1 356 aaKnown RBP8.21□□□□□ -1.09
USP3-208ENST00000558285 ALG9Q9H6U8 611 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 CAB39LQ9H9S4 337 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 SNX15Q9NRS6 342 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms