RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 IQCCQ4KMZ1 466 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 MPPE1Q53F39 396 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 TXNDC8Q6A555 127 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 AQP11Q8NBQ7 271 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 OR4A15Q8NGL6 344 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 HIST1H2AHQ96KK5 128 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 HIST1H2AJQ99878 128 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 H2AFJQ9BTM1 129 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 NTMT1Q9BV86 223 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 SP140LQ9H930 580 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 CCNB1IP1Q9NPC3 277 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 PAK6Q9NQU5 681 aaPredicted RBP11.86□□□□□ -0.51
LDLR-205ENST00000557933 GPATCH2Q9NW75 528 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 RPS6KA6Q9UK32 745 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 DOCK6Q96HP0 2047 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 GRXCR2A6NFK2 248 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 CPNE3O75131 537 aaKnown RBP11.86□□□□□ -0.51
LDLR-205ENST00000557933 C6orf47O95873 294 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 SRCP12931 536 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 HOXD11P31277 338 aaPredicted RBP11.86□□□□□ -0.51
LDLR-205ENST00000557933 GGT2P36268 569 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 SLC11A1P49279 550 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 BCL2L1Q07817 233 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 CCDC58Q4VC31 144 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 PNCKQ6P2M8 343 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 PTCHD4Q6ZW05 846 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 NXPE1Q8N323 547 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 MINDY2Q8NBR6 621 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 FUBP3Q96I24 572 aaKnown RBP eCLIP11.86□□□□□ -0.51
LDLR-205ENST00000557933 MTG2Q9H4K7 406 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 OLA1Q9NTK5 396 aaKnown RBP11.86□□□□□ -0.51
LDLR-205ENST00000557933 TOR4AQ9NXH8 423 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 COQ3Q9NZJ6 369 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 TRPS1Q9UHF7 1281 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 CARD8Q9Y2G2 431 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 PRAMEF33A0A0G2JMD5 474 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 ZNF840PA6NDX5 716 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 EFCAB10A6NFE3 127 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 H3BN98 237 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 PRAMEF10O60809 474 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 SEMA3DO95025 777 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 HOXB9P17482 250 aaPredicted RBP11.85□□□□□ -0.51
LDLR-205ENST00000557933 BDKRB1P46663 353 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 HBA1P69905 142 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 TLE2Q04725 743 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 FAHD1Q6P587 224 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 ZNF517Q6ZMY9 492 aaPredicted RBP11.85□□□□□ -0.51
LDLR-205ENST00000557933 RBM45Q8IUH3 476 aaKnown RBP11.85□□□□□ -0.51
LDLR-205ENST00000557933 ARL14EPQ8N8R7 260 aaPredicted RBP11.85□□□□□ -0.51
LDLR-205ENST00000557933 PCNPQ8WW12 178 aaKnown RBP11.85□□□□□ -0.51
LDLR-205ENST00000557933 SIGLEC11Q96RL6 698 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 GFM1Q96RP9 751 aaKnown RBP11.85□□□□□ -0.51
LDLR-205ENST00000557933 WFDC6Q9BQY6 131 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 SLC30A2Q9BRI3 323 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 ASPNQ9BXN1 380 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 PCDHB1Q9Y5F3 818 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 VWA8A3KMH1 1905 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 PLD2O14939 933 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 ENTPD6O75354 484 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 LHCGRP22888 699 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 RFX2P48378 723 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 PRIM2P49643 509 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 RGNQ15493 299 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 HECTD3Q5T447 861 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 RNF130Q86XS8 419 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 ZNF366Q8N895 744 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 OR9Q1Q8NGQ5 310 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 CHAC2Q8WUX2 184 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 MYDGFQ969H8 173 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 CLIP3Q96DZ5 547 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 OR2A14Q96R47 310 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 PHOX2BQ99453 314 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 ACAT2Q9BWD1 397 aa11.85□□□□□ -0.51
LDLR-205ENST00000557933 MGAT4DA6NG13 374 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 TSC22D2O75157 780 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 NME6O75414 186 aaPredicted RBP11.84□□□□□ -0.51
LDLR-205ENST00000557933 NTN1O95631 604 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 TGFB1P01137 390 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 GASTP01350 101 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 DEFA1P59665 94 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 DEFA3P59666 94 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 CXCR4P61073 352 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 DSC1Q08554 894 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 CDC20Q12834 499 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 DOC2AQ14183 400 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 ADGRF1Q5T601 910 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 CPTPQ5TA50 214 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 PPP2R2DQ66LE6 453 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 FUT10Q6P4F1 479 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 TNFAIP8L2Q6P589 184 aaPredicted RBP11.84□□□□□ -0.51
LDLR-205ENST00000557933 BRAT1Q6PJG6 821 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 TRAF7Q6Q0C0 670 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 B3GLCTQ6Y288 498 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 TAGAPQ8N103 731 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 KIAA1958Q8N8K9 716 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 FATE1Q969F0 183 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 OR51B5Q9H339 312 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 MAN2B2Q9Y2E5 1009 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 A0A1B0GVC2 190 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 A6NIN4 97 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms