RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 MID2Q9UJV3 735 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 A0A088AWK7 358 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 G3V2L1 256 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 H0YIV9 168 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 ERI3O43414 337 aaKnown RBP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 TBX6O95947 436 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 B3GALT4O96024 378 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 IGHEP01854 428 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 SMIM10L1P0DMW3 83 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 ZNF10P21506 573 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 MMP11P24347 488 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 PIK3CBP42338 1070 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 XCR1P46094 333 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 CDH13P55290 713 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 CLCQ05315 142 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 KLC1Q07866 573 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 TGM3Q08188 693 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 ZRSR2Q15696 482 aaKnown RBP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 CPSF6Q16630 551 aaKnown RBP eCLIP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 ADPRMQ3LIE5 342 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 UNC50Q53HI1 259 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 BEND6Q5SZJ8 279 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 TRIM40Q6P9F5 258 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 LRIG3Q6UXM1 1119 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 TMEM151BQ8IW70 566 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 ZC3H7AQ8IWR0 971 aaKnown RBP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 OR2L5Q8NG80 312 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 HUS1BQ8NHY5 278 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 TRPC4APQ8TEL6 797 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 APOBEC4Q8WW27 367 aaKnown RBP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 NACC2Q96BF6 587 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 L3HYPDHQ96EM0 354 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 CMTM7Q96FZ5 175 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 SMIM10Q96HG1 83 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 MAGEB10Q96LZ2 347 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 CDK15Q96Q40 435 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 ARHGAP9Q9BRR9 750 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 MS4A8Q9BY19 250 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 AICDAQ9GZX7 198 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 C12orf65Q9H3J6 166 aaKnown RBP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 CENPHQ9H3R5 247 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 CLK4Q9HAZ1 481 aaKnown RBP12.86□□□□□ -0.35
SHMT2-228ENST00000557302 SEMA3GQ9NS98 782 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 C3orf18Q9UK00 162 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 PLLPQ9Y342 182 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 TSC22D4Q9Y3Q8 395 aa12.86□□□□□ -0.35
SHMT2-228ENST00000557302 ATMQ13315 3056 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 C4orf51C9J302 202 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 PEX12O00623 359 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 SPAG7O75391 227 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 BMP10O95393 424 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 HEXBP07686 556 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 CPA3P15088 417 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 TSPAN8P19075 237 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 PLA2G16P53816 162 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 EMP2P54851 167 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 OLR1P78380 273 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 BTN3A2P78410 334 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 ATP1A4Q13733 1029 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 GGTA1PQ4G0N0 100 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 TMEM35AQ53FP2 167 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 TTC19Q6DKK2 380 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-228ENST00000557302 CHSY3Q70JA7 882 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 PPP1R32Q7Z5V6 425 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 MILR1Q7Z6M3 343 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 CCNYL1Q8N7R7 359 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 SRFBP1Q8NEF9 429 aaKnown RBP12.85□□□□□ -0.35
SHMT2-228ENST00000557302 ARMC2Q8NEN0 867 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 OR4F6Q8NGB9 312 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 OR5T3Q8NGG3 340 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 WBP1Q96G27 269 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 F2RL3Q96RI0 385 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 ZNF382Q96SR6 550 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 MTERF1Q99551 399 aaKnown RBP12.85□□□□□ -0.35
SHMT2-228ENST00000557302 COPS7BQ9H9Q2 264 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-228ENST00000557302 DMRT3Q9NQL9 472 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 ACSS2Q9NR19 701 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 STK38LQ9Y2H1 464 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 KCNMB2Q9Y691 235 aa12.85□□□□□ -0.35
SHMT2-228ENST00000557302 PIEZO2Q9H5I5 2752 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 A0A0G2JN53 185 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 ARGFXA6NJG6 315 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 IDSB3KWA1 339 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 PPP6CO00743 305 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 CTIFO43310 598 aaKnown RBP12.84□□□□□ -0.35
SHMT2-228ENST00000557302 CHST10O43529 356 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 SH3BGRLO75368 114 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 MLYCDO95822 493 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 TGFB1P01137 390 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 IL10P22301 178 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 RRADP55042 308 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 POLE2P56282 527 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 DNAJB13P59910 316 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 NAA20P61599 178 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 LCP2Q13094 533 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 IFT88Q13099 833 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 LINC00303Q3SY05 128 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 MINDY4Q4G0A6 757 aa12.84□□□□□ -0.35
SHMT2-228ENST00000557302 C10orf62Q5T681 223 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-228ENST00000557302 MFSD4BQ5TF39 518 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms