RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 A0A1B0GX78 115 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 SERTM1A2A2V5 107 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 PLPP1O14494 284 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 PIP5K1BO14986 540 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 TLX3O43711 291 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 GALR3O60755 368 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 KLHL18O94889 574 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 LINC00032P0C843 101 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 ALOX12P18054 663 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 RPL14P50914 215 aaKnown RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 FOXL2P58012 376 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 STXBP1P61764 594 aaKnown RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 OLR1P78380 273 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 BTN3A2P78410 334 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 MAT1AQ00266 395 aaKnown RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 TBL3Q12788 808 aaKnown RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 CUL3Q13618 768 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 FAM53BQ14153 422 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 NDUFA9Q16795 377 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 SYT16Q17RD7 645 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 TMEM35AQ53FP2 167 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 C6orf15Q6UXA7 325 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 ZNF517Q6ZMY9 492 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 ZNF793Q6ZN11 406 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 Q6ZSR9 355 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 CHSY3Q70JA7 882 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 COX15Q7KZN9 410 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 TRIM46Q7Z4K8 759 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 DTX1Q86Y01 620 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 OR5T3Q8NGG3 340 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 TWIST2Q8WVJ9 160 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 GAL3ST3Q96A11 431 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 C3orf30Q96M34 536 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 ZNF578Q96N58 590 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 LRFN5Q96NI6 719 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 MRPL1Q9BYD6 325 aaKnown RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 BRF2Q9HAW0 419 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 THSD1Q9NS62 852 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 TXLNGQ9NUQ3 528 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 MARCOQ9UEW3 520 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-227ENST00000557269 ACSL6Q9UKU0 697 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 PPT2Q9UMR5 302 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 SLC12A4Q9UP95 1085 aa12.16□□□□□ -0.46
SHMT2-227ENST00000557269 C1QTNF9BB2RNN3 333 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 TCP11X1B4DZS4 312 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-227ENST00000557269 STMND1H3BQB6 276 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 RAD1O60671 282 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 RDH16O75452 317 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 EEDO75530 441 aaKnown RBP12.15□□□□□ -0.46
SHMT2-227ENST00000557269 SKAP2O75563 359 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-227ENST00000557269 HBQ1P09105 142 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 C1QTNF9P0C862 333 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 KITP10721 976 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 BSGP35613 385 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 MDH1P40925 334 aaKnown RBP12.15□□□□□ -0.46
SHMT2-227ENST00000557269 PHEXP78562 749 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 BTKQ06187 659 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 ABHD18Q0P651 414 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 CSTF3Q12996 717 aaKnown RBP12.15□□□□□ -0.46
SHMT2-227ENST00000557269 RUNX2Q13950 521 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 HERC3Q15034 1050 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 NKAIN1Q4KMZ8 207 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 C10orf62Q5T681 223 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-227ENST00000557269 FAM69BQ5VUD6 431 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 RGS9BPQ6ZS82 235 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 FAM47EQ6ZV65 393 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 ABHD13Q7L211 337 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 MAVSQ7Z434 540 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 PROKR1Q8TCW9 393 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 MR1Q95460 341 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 NKD1Q969G9 470 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 MMABQ96EY8 250 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-227ENST00000557269 APIPQ96GX9 242 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 PPP1R36Q96LQ0 422 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 SERPINI1Q99574 410 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 CHST8Q9H2A9 424 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 ANKHQ9HCJ1 492 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 ZNF304Q9HCX3 659 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 GIMAP2Q9UG22 337 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 FER1L5A0AVI2 2057 aa12.15□□□□□ -0.46
SHMT2-227ENST00000557269 SCN3AQ9NY46 2000 aa12.15□□□□□ -0.47
SHMT2-227ENST00000557269 URADA6NGE7 173 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 ZNF195O14628 629 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 TERTO14746 1132 aaKnown RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 CNOT3O75175 753 aaKnown RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 SNUPNO95149 360 aaKnown RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 NSA2O95478 260 aaKnown RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 ONECUT2O95948 504 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 GBAP04062 536 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 KLK3P07288 261 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 HSD3B1P14060 373 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 ATP5A1P25705 553 aaKnown RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 HSD3B2P26439 372 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 CERS1P27544 350 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 CD82P27701 267 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 RAP1GDS1P52306 607 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 RAE1P78406 368 aaKnown RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 DCDP81605 110 aaKnown RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 ZNF33BQ06732 778 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms