RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 SBSNQ6UWP8 590 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 IGFL2Q6UWQ7 119 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 VN1R4Q7Z5H5 301 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 CPEB2Q7Z5Q1 589 aaKnown RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 GPSM1Q86YR5 675 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 KRT78Q8N1N4 520 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 Q8NA96 180 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 KCT2Q8NC54 265 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ZCCHC10Q8TBK6 192 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 NEIL2Q969S2 332 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 RNF166Q96A37 237 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TM4SF19Q96DZ7 209 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TSNARE1Q96NA8 513 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 NSUN5Q96P11 429 aaKnown RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 OR1F2PQ96R84 312 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 MACROD1Q9BQ69 325 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 SARGQ9BW04 601 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 VN1R1Q9GZP7 353 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 DERL2Q9GZP9 239 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ZNF700Q9H0M5 742 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TSPYL1Q9H0U9 437 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 PLAC1Q9HBJ0 212 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 HCN3Q9P1Z3 774 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 OARD1Q9Y530 152 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 LOC102723996A0A087X1L8 192 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TRAV17A0A0B4J275 112 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TCRBV9S1A1TA0A576 114 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 NPEPPSL1A6NEC2 478 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ANKUB1A6NFN9 424 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ANKDD1BA6NHY2 528 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 NCF1BA6NI72 391 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 FIGNL2A6NMB9 653 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 NCF1CA8MVU1 366 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 CDC7O00311 574 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TP73O15350 636 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 KLHL18O94889 574 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 WDR47O94967 919 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 THBS1P07996 1170 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 CCDC166P0CW27 439 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 NCF1P14598 390 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 GSTM2P28161 218 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 MAGEA4P43358 317 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TAS2R50P59544 299 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 STXBP1P61764 594 aaKnown RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 MEF2AQ02078 507 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TNP2Q05952 138 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 C2orf54Q08AI8 447 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ZNF460Q14592 562 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ABRAXAS2Q15018 415 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TGFBIQ15582 683 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TSNQ15631 228 aaKnown RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 EXT1Q16394 746 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 HIST2H2ACQ16777 129 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 EIF2S3LQ2VIR3 472 aaKnown RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 BTBD16Q32M84 506 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 DEFB134Q4QY38 66 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 CATSPEREQ5SY80 951 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 HIST2H2AA3Q6FI13 130 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TMEM205Q6UW68 189 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 FAM180AQ6UWF9 173 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 SPATC1Q76KD6 591 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TMPRSS11BQ86T26 416 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TBC1D1Q86TI0 1168 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ZC3H7AQ8IWR0 971 aaKnown RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ARHGEF39Q8N4T4 335 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 SIRT6Q8N6T7 355 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 HORMAD2Q8N7B1 307 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ZNF740Q8NDX6 193 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 OR1N1Q8NGS0 311 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 STAG3L4Q8TBR4 150 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 BRIX1Q8TDN6 353 aaKnown RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 HAS2Q92819 552 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 TBC1D20Q96BZ9 403 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 MAGEB10Q96LZ2 347 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 LPAR4Q99677 370 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 PITHD1Q9GZP4 211 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 PELI2Q9HAT8 420 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ZBTB20Q9HC78 741 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-222ENST00000556768 ASF1BQ9NVP2 202 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 WWOXQ9NZC7 414 aa6.92□□□□□ -1.3
SCFD1-222ENST00000556768 MAST4O15021 2626 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 A0A1W2PQ72 361 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 CLGNO14967 610 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 RDH16O75452 317 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 CDC123O75794 336 aaPredicted RBP6.91□□□□□ -1.3
SCFD1-222ENST00000556768 URI1O94763 535 aaPredicted RBP6.91□□□□□ -1.3
SCFD1-222ENST00000556768 FHP07954 510 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 SERPINA6P08185 405 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 CRABP2P29373 138 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 PHBP35232 272 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 HNF4AP41235 474 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 TSFMP43897 325 aaKnown RBP6.91□□□□□ -1.3
SCFD1-222ENST00000556768 PGGT1BP53609 377 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 RAB10P61026 200 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 ZNF33BQ06732 778 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 TGM3Q08188 693 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 NAB1Q13506 487 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 RCN2Q14257 317 aa6.91□□□□□ -1.3
SCFD1-222ENST00000556768 PPP1R3AQ16821 1122 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms