RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 YDJCA8MPS7 323 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 A8MXK9 166 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 TRAFD1O14545 582 aaPredicted RBP3.69□□□□□ -1.82
SCFD1-221ENST00000556534 SLC30A4O14863 429 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 SIGLEC5O15389 551 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 MTRF1O75570 445 aaKnown RBP3.69□□□□□ -1.82
SCFD1-221ENST00000556534 HPRP00739 348 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 GOT1P17174 413 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 CLCN4P51793 760 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 RBP5P82980 135 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 FOLH1Q04609 750 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 SCN1BQ07699 218 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 COX10Q12887 443 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 PPA1Q15181 289 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 KRT71Q3SY84 523 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 ZRANB3Q5FWF4 1079 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 HECTD3Q5T447 861 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 PET117Q6UWS5 81 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 C15orf52Q6ZUT6 534 aaKnown RBP3.69□□□□□ -1.82
SCFD1-221ENST00000556534 ABHD12Q8N2K0 398 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 OR52B6Q8NGF0 335 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 SAP25Q8TEE9 199 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 NPRL2Q8WTW4 380 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 DEPDC1BQ8WUY9 529 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.69□□□□□ -1.82
SCFD1-221ENST00000556534 FOXN4Q96NZ1 517 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 PCDHB18PQ96TA0 734 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 DCTN5Q9BTE1 182 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 PAPOLGQ9BWT3 736 aaKnown RBP3.69□□□□□ -1.82
SCFD1-221ENST00000556534 RAB11FIP5Q9BXF6 653 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 DPEP2Q9H4A9 486 aa3.69□□□□□ -1.82
SCFD1-221ENST00000556534 GPN1Q9HCN4 374 aaPredicted RBP3.69□□□□□ -1.82
SCFD1-221ENST00000556534 MRPS18CQ9Y3D5 142 aaKnown RBP3.69□□□□□ -1.82
SCFD1-221ENST00000556534 HBS1LQ9Y450 684 aaKnown RBP3.69□□□□□ -1.82
SCFD1-221ENST00000556534 LMO7DNF2Z398 122 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 ST8SIA3O43173 380 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 RLN1P04808 185 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 VDRP11473 427 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 KRT3P12035 628 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 CASTP20810 708 aaKnown RBP3.68□□□□□ -1.82
SCFD1-221ENST00000556534 GIFP27352 417 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 OXTRP30559 389 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 SRD5A2P31213 254 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 CAPGP40121 348 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 FKBP3Q00688 224 aaKnown RBP3.68□□□□□ -1.82
SCFD1-221ENST00000556534 CD300CQ08708 224 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 ZNF146Q15072 292 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 LRRC37A5PQ49AS3 106 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 Q6ZVQ6 151 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 PHC2Q8IXK0 858 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 POM121L12Q8N7R1 296 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 CD99L2Q8TCZ2 262 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 RASL10AQ92737 203 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 ZNF597Q96LX8 424 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 TUBB1Q9H4B7 451 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 RPS10P5Q9NQ39 176 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 KLK11Q9UBX7 282 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 ITGA11Q9UKX5 1188 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 SMAD5-AS1Q9Y6J3 95 aa3.68□□□□□ -1.82
SCFD1-221ENST00000556534 TP53BP1Q12888 1972 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 ILVBLA1L0T0 632 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 ACOD1A6NK06 481 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 A8MU76 341 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 SRRM5B3KS81 715 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 WDR46O15213 610 aaKnown RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 TNFSF12O43508 249 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 ACSL4O60488 711 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 POP4O95707 220 aaKnown RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 HOXD4P09016 255 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 IL4RP24394 825 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 CTNNA2P26232 953 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 PIK3R1P27986 724 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 PKLRP30613 574 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 FEN1P39748 380 aaKnown RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 ABCE1P61221 599 aaKnown RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 ERVK-16P61578 105 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 RPP38P78345 283 aaKnown RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 KRT83P78385 493 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 PTK6Q13882 451 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 ZNF239Q16600 458 aaKnown RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 TCEAL6Q6IPX3 200 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 SHQ1Q6PI26 577 aaKnown RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 P2RY8Q86VZ1 359 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 CARM1Q86X55 608 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 CDC20BQ86Y33 519 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 C4orf19Q8IY42 314 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 UXS1Q8NBZ7 420 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 SSC4DQ8WTU2 575 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 SGF29Q96ES7 293 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 PRMT1Q99873 361 aaKnown RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 ATG101Q9BSB4 218 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 ZNF577Q9BSK1 485 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 MLPHQ9BV36 600 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 THUMPD3Q9BV44 507 aaKnown RBP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 NACAP1Q9BZK3 213 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 IL1RAPQ9NPH3 570 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.67□□□□□ -1.82
SCFD1-221ENST00000556534 NCKAP1Q9Y2A7 1128 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 PCDHGA1Q9Y5H4 931 aa3.67□□□□□ -1.82
SCFD1-221ENST00000556534 SERINC4A6NH21 518 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms