RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 CENPLQ8N0S6 344 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-206ENST00000553529 BEST3Q8N1M1 668 aa17.13■□□□□ 0.33
SHMT2-206ENST00000553529 UHMK1Q8TAS1 419 aaKnown RBP17.13■□□□□ 0.33
SHMT2-206ENST00000553529 METTL21AQ8WXB1 218 aa17.13■□□□□ 0.33
SHMT2-206ENST00000553529 ANKRD7Q92527 254 aa17.13■□□□□ 0.33
SHMT2-206ENST00000553529 TBC1D20Q96BZ9 403 aa17.13■□□□□ 0.33
SHMT2-206ENST00000553529 CSF3RQ99062 836 aa17.13■□□□□ 0.33
SHMT2-206ENST00000553529 RNF112Q9ULX5 631 aa17.13■□□□□ 0.33
SHMT2-206ENST00000553529 UTP20O75691 2785 aaKnown RBP17.13■□□□□ 0.33
SHMT2-206ENST00000553529 CROCCQ5TZA2 2017 aa17.13■□□□□ 0.33
SHMT2-206ENST00000553529 ANKUB1A6NFN9 424 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 NDC80O14777 642 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 ZNHIT1O43257 154 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 COL8A1P27658 744 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 TSFMP43897 325 aaKnown RBP17.12■□□□□ 0.33
SHMT2-206ENST00000553529 TNFSF10P50591 281 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 DOC2AQ14183 400 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 GRTP1Q5TC63 336 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 ZNF468Q5VIY5 522 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-206ENST00000553529 RAPH1Q70E73 1250 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 CYP4X1Q8N118 509 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 KIAA1191Q96A73 305 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 TSPAN17Q96FV3 270 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 SIGLEC12Q96PQ1 595 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 LMF1Q96S06 567 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 ATOH8Q96SQ7 321 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 TUBB6Q9BUF5 446 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 DNAJC11Q9NVH1 559 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 ZNF358Q9NW07 568 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 PTBP2Q9UKA9 531 aaKnown RBP17.12■□□□□ 0.33
SHMT2-206ENST00000553529 CLDN16Q9Y5I7 305 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 PTPN13Q12923 2485 aa17.12■□□□□ 0.33
SHMT2-206ENST00000553529 USP9XQ93008 2570 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-206ENST00000553529 ESPL1Q14674 2120 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 SUPT3HB4E1H0 165 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 RTCAO00442 366 aaKnown RBP17.11■□□□□ 0.33
SHMT2-206ENST00000553529 ERI3O43414 337 aaKnown RBP17.11■□□□□ 0.33
SHMT2-206ENST00000553529 SUPT3HO75486 399 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 CERS1P27544 350 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 STX2P32856 288 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 SPRP35270 261 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-206ENST00000553529 HNMTP50135 292 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 PLA2G16P53816 162 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 KCNK10P57789 538 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 OR4D2P58180 307 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 TLR1Q15399 786 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 TMIGD1Q6UXZ0 262 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 CYS1Q717R9 158 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 CLNKQ7Z7G1 428 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 PLD6Q8N2A8 252 aaKnown RBP17.11■□□□□ 0.33
SHMT2-206ENST00000553529 FAM47BQ8NA70 645 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 PDPRQ8NCN5 879 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 LRRN4CLQ8ND94 238 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 MS4A6EQ96DS6 147 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 PTCHD1Q96NR3 888 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 SORBS1Q9BX66 1292 aaKnown RBP17.11■□□□□ 0.33
SHMT2-206ENST00000553529 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.11■□□□□ 0.33
SHMT2-206ENST00000553529 KCNK13Q9HB14 408 aa17.11■□□□□ 0.33
SHMT2-206ENST00000553529 LRIT2A6NDA9 550 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 MAGEB17A8MXT2 336 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 SAP18O00422 153 aaKnown RBP17.1■□□□□ 0.33
SHMT2-206ENST00000553529 CLGNO14967 610 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 ACSL3O95573 720 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 SERPINA6P08185 405 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 MTHFD2P13995 350 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 GNAZP19086 355 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 MST1P26927 711 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 GGT5P36269 586 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 SLC26A5P58743 744 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 CAV1Q03135 178 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 CKAP4Q07065 602 aaKnown RBP17.1■□□□□ 0.33
SHMT2-206ENST00000553529 XKR6Q5GH73 641 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 PLAG1Q6DJT9 500 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 ABHD13Q7L211 337 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 UBE3DQ7Z6J8 389 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 PLPP5Q8NEB5 264 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 QRFPRQ96P65 431 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 F2RL3Q96RI0 385 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 CDC42EP4Q9H3Q1 356 aaKnown RBP17.1■□□□□ 0.33
SHMT2-206ENST00000553529 SNX15Q9NRS6 342 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 STMN3Q9NZ72 180 aa17.1■□□□□ 0.33
SHMT2-206ENST00000553529 IGKV3D-11A0A0A0MRZ8 115 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 STK16O75716 305 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 ALDOAP04075 364 aaKnown RBP17.09■□□□□ 0.33
SHMT2-206ENST00000553529 C2P06681 752 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 GSTA2P09210 222 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 ATP6V0D1P61421 351 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 CHIT1Q13231 466 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 PDK4Q16654 411 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 SULT1C3Q6IMI6 304 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 ZNF793Q6ZN11 406 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 C16orf47Q6ZP98 133 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-206ENST00000553529 RIPOR1Q6ZS17 1223 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 TRPV3Q8NET8 790 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 SSC4DQ8WTU2 575 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 FAR1Q8WVX9 515 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 IFT81Q8WYA0 676 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 VPS50Q96JG6 964 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 OR1F2PQ96R84 312 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 SLC29A3Q9BZD2 475 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms