RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 DPEP2Q9H4A9 486 aa4.5□□□□□ -1.69
SCFD1-209ENST00000553280 POLE3Q9NRF9 147 aa4.5□□□□□ -1.69
SCFD1-209ENST00000553280 TAAR2Q9P1P5 351 aa4.5□□□□□ -1.69
SCFD1-209ENST00000553280 SH3BGRL2Q9UJC5 107 aa4.5□□□□□ -1.69
SCFD1-209ENST00000553280 ELF5Q9UKW6 265 aaPredicted RBP4.5□□□□□ -1.69
SCFD1-209ENST00000553280 TMCC3Q9ULS5 477 aa4.5□□□□□ -1.69
SCFD1-209ENST00000553280 COLEC10Q9Y6Z7 277 aa4.5□□□□□ -1.69
SCFD1-209ENST00000553280 ATP8B3O60423 1300 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 CCDC162PA2VCL2 907 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 A8MVM7 634 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 CPLX1O14810 134 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 KLF11O14901 512 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 TEX28O15482 410 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 INSIG1O15503 277 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 EXTL3O43909 919 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 SOCS5O75159 536 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 CPNE6O95741 557 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 PTBP3O95758 552 aaKnown RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 PAK4O96013 591 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 PDGFBP01127 241 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 VTNP04004 478 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 GPIP06744 558 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 ODC1P11926 461 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 B4GALT1P15291 398 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 DNAJB1P25685 340 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 ITGA3P26006 1051 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 CCND2P30279 289 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 STIP1P31948 543 aaKnown RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 TNFSF10P50591 281 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 OR1D5P58170 312 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 SGCGQ13326 291 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 MSLNQ13421 630 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 CEACAM7Q14002 265 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 DPYSQ14117 519 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 CCDC6Q16204 474 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 TAF1BQ53T94 588 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 ZNF776Q68DI1 518 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 TMEM207Q6UWW9 146 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 RBMS3Q6XE24 437 aaKnown RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 MACC1Q6ZN28 852 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 ZNF771Q7L3S4 317 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 FCRLAQ7L513 359 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 LMNTD2Q8IXW0 634 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 CNPY4Q8N129 248 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 TRPV3Q8NET8 790 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 OR4C3Q8NH37 302 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 OR1L3Q8NH93 324 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 SPATA18Q8TC71 538 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 CHURC1Q8WUH1 139 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 APOBEC4Q8WW27 367 aaKnown RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 ZNF354BQ96LW1 612 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 C10orf90Q96M02 699 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 CCM2Q9BSQ5 444 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 ATG10Q9H0Y0 220 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 TRPV6Q9H1D0 765 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 DPEP3Q9H4B8 488 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 ZFP57Q9NU63 452 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 EXOC7Q9UPT5 735 aa4.49□□□□□ -1.69
SCFD1-209ENST00000553280 MRPS2Q9Y399 296 aaKnown RBP4.49□□□□□ -1.69
SCFD1-209ENST00000553280 SERINC4A6NH21 518 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 ACOT8O14734 319 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 CHUKO15111 745 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 MLNRO43193 412 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 NME2P1O60361 137 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 SMPD2O60906 423 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 GMNNO75496 209 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 NGFP01138 241 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 HEXBP07686 556 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 FGF3P11487 239 aaPredicted RBP4.48□□□□□ -1.69
SCFD1-209ENST00000553280 KRT5P13647 590 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 ANPEPP15144 967 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 AMD1P17707 334 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 CHRNA3P32297 505 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 MAGEA11P43364 429 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 SLC6A12P48065 614 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 HSD17B7P56937 341 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 CCZ1BP86790 482 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 CCZ1P86791 482 aaPredicted RBP4.48□□□□□ -1.69
SCFD1-209ENST00000553280 POU3F1Q03052 451 aaPredicted RBP4.48□□□□□ -1.69
SCFD1-209ENST00000553280 SRSF9Q13242 221 aaKnown RBP eCLIP4.48□□□□□ -1.69
SCFD1-209ENST00000553280 GPR50Q13585 617 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 ITGA9Q13797 1035 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 GRB14Q14449 540 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 KARSQ15046 597 aaKnown RBP4.48□□□□□ -1.69
SCFD1-209ENST00000553280 SPHARQ15513 63 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 FGD3Q5JSP0 725 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 ZNF324BQ6AW86 544 aaPredicted RBP4.48□□□□□ -1.69
SCFD1-209ENST00000553280 WBP2NLQ6ICG8 309 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 UNC5DQ6UXZ4 953 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 TRPT1Q86TN4 253 aaKnown RBP4.48□□□□□ -1.69
SCFD1-209ENST00000553280 RFLNBQ8N5W9 214 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 CD99L2Q8TCZ2 262 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 BPIFA2Q96DR5 249 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 PIGQQ9BRB3 760 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 NUSAP1Q9BXS6 441 aaKnown RBP4.48□□□□□ -1.69
SCFD1-209ENST00000553280 MARCH7Q9H992 704 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 VIPAS39Q9H9C1 493 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 SIX2Q9NPC8 291 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 ACOXLQ9NUZ1 547 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 NDUFA13Q9P0J0 144 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms