RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ATP13A2Q9NQ11 1180 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 STARD7Q9NQZ5 370 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 GPATCH2Q9NW75 528 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 NDRG2Q9UN36 371 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SPEF1Q9Y4P9 236 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 KLK4Q9Y5K2 254 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 RAI2Q9Y5P3 530 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SZT2Q5T011 3432 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 A0A1W2PQL4 384 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 C2orf78A6NCI8 922 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 EFCAB10A6NFE3 127 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 GTPBP1O00178 669 aaKnown RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 TNFRSF11BO00300 401 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 TSC22D2O75157 780 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 EPOP01588 193 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 GPX2P18283 190 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 POU1F1P28069 291 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 GKP32189 559 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SOX6P35712 828 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 HSPA14Q0VDF9 509 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 DBPQ10586 325 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 BOP1Q14137 746 aaKnown RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 INSL4Q14641 139 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 P2RY14Q15391 338 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SPDYE7PQ495Y7 208 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 INO80DQ53TQ3 878 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 LIPKQ5VXJ0 399 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 FAM205BPQ63HN1 556 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 FAM131AQ6UXB0 335 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SLC24A5Q71RS6 500 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SERPINA11Q86U17 422 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 AMIGO1Q86WK6 493 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 RDH10Q8IZV5 341 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CELF5Q8N6W0 485 aaKnown RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 DBF4BQ8NFT6 615 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 OR10G2Q8NGC3 310 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 ZFAND1Q8TCF1 268 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SH3KBP1Q96B97 665 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 UPRTQ96BW1 309 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 TMCO6Q96DC7 493 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SLC6A18Q96N87 628 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 HHIPQ96QV1 700 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 GFM1Q96RP9 751 aaKnown RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 ZIC5Q96T25 663 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 MGME1Q9BQP7 344 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 ADGRE3Q9BY15 652 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 MKRN2Q9H000 416 aaKnown RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 GALNT9Q9HCQ5 603 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 B3GAT2Q9NPZ5 323 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 EVA1BQ9NVM1 165 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CFL2Q9Y281 166 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 FCF1Q9Y324 198 aaKnown RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 GRIP1Q9Y3R0 1128 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CKAP5Q14008 2032 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 MANSC4A6NHS7 340 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 ANKRD66B4E2M5 251 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 ENTPD6O75354 484 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CSO75390 466 aaKnown RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SLC25A14O95258 325 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SOX14O95416 240 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 F11P03951 625 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CR2P20023 1033 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 LPOP22079 712 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 ALAS2P22557 587 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CORO1AP31146 461 aaKnown RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CNR2P34972 360 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 TTPAP49638 278 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 MAN2A2P49641 1150 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 GZMKP49863 264 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 LSM11P83369 360 aaKnown RBP eCLIP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 TTLL9Q3SXZ7 439 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 TOR2AQ5JU69 321 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SLC35F1Q5T1Q4 408 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 MLIPQ5VWP3 458 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SERINC5Q86VE9 423 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CCDC28AQ8IWP9 274 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 IQCF2Q8IXL9 164 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SYNPOQ8N3V7 929 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 C7orf57Q8NEG2 295 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 ATP6V1C2Q8NEY4 427 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 OR4C15Q8NGM1 316 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SELENOMQ8WWX9 145 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 NELL1Q92832 810 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 PEX13Q92968 403 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 ZBED6CLQ96FA7 236 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 DCLRE1CQ96SD1 692 aaKnown RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CHST8Q9H2A9 424 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CRISPLD1Q9H336 500 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CDCP1Q9H5V8 836 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 ASB8Q9H765 288 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 C11orf16Q9NQ32 467 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 DNAJC27Q9NZQ0 273 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 TRPM5Q9NZQ8 1165 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 PLEKHB1Q9UF11 243 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 LSM2Q9Y333 95 aaKnown RBP4.66□□□□□ -1.66
LIMA1-214ENST00000552783 HSPB11Q9Y547 144 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 ALG5Q9Y673 324 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 SDK1Q7Z5N4 2213 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 CHD5Q8TDI0 1954 aa4.66□□□□□ -1.66
LIMA1-214ENST00000552783 TDRD15B5MCY1 1934 aaKnown RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms