RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 MAD1L1Q9Y6D9 718 aa7.17□□□□□ -1.26
NEK3-201ENST00000550331 NIPBLQ6KC79 2804 aaeCLIP7.16□□□□□ -1.26
NEK3-201ENST00000550331 FEZF1A0PJY2 475 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 GABRR3A8MPY1 467 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 MAGEB17A8MXT2 336 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 NDUFS4O43181 175 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 GALR3O60755 368 aaPredicted RBP7.16□□□□□ -1.26
NEK3-201ENST00000550331 RDH16O75452 317 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 TTC4O95801 387 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 F7P08709 466 aaPredicted RBP7.16□□□□□ -1.26
NEK3-201ENST00000550331 HIST1H2AGP0C0S8 130 aaPredicted RBP7.16□□□□□ -1.26
NEK3-201ENST00000550331 CDH1P12830 882 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 NPPBP16860 134 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 PGAM1P18669 254 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 HIST1H2ADP20671 130 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 HTR1EP28566 365 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 CD96P40200 585 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 SMSP52788 366 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 AP1S2P56377 157 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 ALDH6A1Q02252 535 aaKnown RBP7.16□□□□□ -1.26
NEK3-201ENST00000550331 NAE1Q13564 534 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 USP10Q14694 798 aaKnown RBP7.16□□□□□ -1.26
NEK3-201ENST00000550331 CRYMQ14894 314 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 NSDHLQ15738 373 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 C3AR1Q16581 482 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 SFT2D3Q587I9 215 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 DUPD1Q68J44 220 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 FCRLBQ6BAA4 426 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 CCDC137Q6PK04 289 aaKnown RBP7.16□□□□□ -1.26
NEK3-201ENST00000550331 SPNS3Q6ZMD2 512 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 Q6ZPB1 254 aaPredicted RBP7.16□□□□□ -1.26
NEK3-201ENST00000550331 GALNT7Q86SF2 657 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 CNTN4Q8IWV2 1026 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 MYO1HQ8N1T3 1032 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 AFAP1L2Q8N4X5 818 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 TBC1D19Q8N5T2 526 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 AMER2Q8N7J2 671 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 NAT8LQ8N9F0 302 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 TMEM178AQ8NBL3 297 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 FAM98AQ8NCA5 519 aaKnown RBP7.16□□□□□ -1.26
NEK3-201ENST00000550331 ZNF740Q8NDX6 193 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 OR4K1Q8NGD4 311 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 ZCCHC10Q8TBK6 192 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 EEF1AKMT1Q8WVE0 214 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 TBC1D20Q96BZ9 403 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 PEX11GQ96HA9 241 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 PBKQ96KB5 322 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 HIST1H2AHQ96KK5 128 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 SIGLEC10Q96LC7 697 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 FRMD6Q96NE9 622 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 NAP1L3Q99457 506 aaPredicted RBP7.16□□□□□ -1.26
NEK3-201ENST00000550331 NDNQ99608 321 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 NPAS2Q99743 824 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 HIST1H2AJQ99878 128 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 MACROD1Q9BQ69 325 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 H2AFJQ9BTM1 129 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 TRIM8Q9BZR9 551 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 ATG10Q9H0Y0 220 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 CLK4Q9HAZ1 481 aaKnown RBP7.16□□□□□ -1.26
NEK3-201ENST00000550331 LANCL2Q9NS86 450 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 SH3BGRL2Q9UJC5 107 aa7.16□□□□□ -1.26
NEK3-201ENST00000550331 TRBC2A0A5B9 178 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 PABPN1LA6NDY0 278 aaKnown RBP7.15□□□□□ -1.26
NEK3-201ENST00000550331 OR2W5A6NFC9 320 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 OR1F1O43749 312 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 LCMT2O60294 686 aaKnown RBP7.15□□□□□ -1.26
NEK3-201ENST00000550331 CDC123O75794 336 aaPredicted RBP7.15□□□□□ -1.26
NEK3-201ENST00000550331 NEURL1O76050 574 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 WISP2O76076 250 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 FHP07954 510 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 SP1P08047 785 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 ENO2P09104 434 aaPredicted RBP7.15□□□□□ -1.26
NEK3-201ENST00000550331 ESRRAP11474 423 aaPredicted RBP7.15□□□□□ -1.26
NEK3-201ENST00000550331 ALOX12P18054 663 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 FNTAP49354 379 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 CCR8P51685 355 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 CDKN2DP55273 166 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 OR4D2P58180 307 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 SLC26A5P58743 744 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 ADORA2A-AS1P86434 159 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 TIAL1Q01085 375 aaKnown RBP eCLIP7.15□□□□□ -1.26
NEK3-201ENST00000550331 MEF2AQ02078 507 aaPredicted RBP7.15□□□□□ -1.26
NEK3-201ENST00000550331 OC90Q02509 493 aaPredicted RBP7.15□□□□□ -1.26
NEK3-201ENST00000550331 ACTN3Q08043 901 aaPredicted RBP7.15□□□□□ -1.26
NEK3-201ENST00000550331 RGS1Q08116 209 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 PHKG1Q16816 387 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 SPANXN3Q5MJ09 141 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 SPINK14Q6IE38 97 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 SLC25A25Q6KCM7 469 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 PAQR3Q6TCH7 311 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 MBOAT1Q6ZNC8 495 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 QSOX2Q6ZRP7 698 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 KIAA0408Q6ZU52 694 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 CDH24Q86UP0 819 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 RPS19BP1Q86WX3 136 aaKnown RBP7.15□□□□□ -1.26
NEK3-201ENST00000550331 SPPL2CQ8IUH8 684 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 SIAH3Q8IW03 269 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 PPIL6Q8IXY8 311 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 SHISA5Q8N114 240 aa7.15□□□□□ -1.26
NEK3-201ENST00000550331 OR5T3Q8NGG3 340 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms