RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 SUCOQ9UBS9 1254 aaKnown RBP16.31■□□□□ 0.2
CHMP1A-205ENST00000548650 SH3BGRL2Q9UJC5 107 aa16.31■□□□□ 0.2
CHMP1A-205ENST00000548650 KCNE2Q9Y6J6 123 aa16.31■□□□□ 0.2
CHMP1A-205ENST00000548650 TCRBV16S1A1N1A0A5B0 115 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 CCDC188H7C350 402 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 CCL21O00585 134 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 FANCGO15287 622 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 WISP3O95389 354 aaPredicted RBP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 SERPINA6P08185 405 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 RNH1P13489 461 aaKnown RBP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 CD46P15529 392 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 TPP2P29144 1249 aaPredicted RBP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 EEF1DP29692 281 aaKnown RBP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 SLC6A12P48065 614 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 RBPJQ06330 500 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 ART3Q13508 389 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 TSNQ15631 228 aaKnown RBP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 C18orf21Q32NC0 220 aaPredicted RBP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 TOR1AIP1Q5JTV8 583 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 ZNF468Q5VIY5 522 aaPredicted RBP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 SIAH3Q8IW03 269 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 KLHDC8AQ8IYD2 350 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 CA13Q8N1Q1 262 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 TMEM178AQ8NBL3 297 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 THAP3Q8WTV1 239 aaPredicted RBP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 VPS39Q96JC1 886 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 GPR137Q96N19 417 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 PTCHD1Q96NR3 888 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 EGFL8Q99944 293 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 TSPAN10Q9H1Z9 355 aaPredicted RBP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 RHOJQ9H4E5 214 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 KLF2Q9Y5W3 355 aaPredicted RBP16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 PKDREJQ9NTG1 2253 aa16.3■□□□□ 0.2
CHMP1A-205ENST00000548650 URADA6NGE7 173 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 EFCAB8A8MWE9 144 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 NDC80O14777 642 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 PRMT3O60678 531 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 GRNP28799 593 aaKnown RBP16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 RPL21P46778 160 aaKnown RBP16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 HNMTP50135 292 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 GNG11P61952 73 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 OC90Q02509 493 aaPredicted RBP16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 CBLBQ13191 982 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 RBBP5Q15291 538 aaKnown RBP16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 MTFR2Q6P444 385 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 RPTNQ6XPR3 784 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 SLCO4C1Q6ZQN7 724 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 FRA10AC1Q70Z53 315 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 GALNTL5Q7Z4T8 443 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 RPS19BP1Q86WX3 136 aaKnown RBP16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 CYP4X1Q8N118 509 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 ZNF808Q8N4W9 903 aaPredicted RBP16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 NFAM1Q8NET5 270 aaPredicted RBP16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 RHBDF1Q96CC6 855 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 NAPGQ99747 312 aaPredicted RBP16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 UNKQ9C0B0 810 aaKnown RBP16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 CDCP1Q9H5V8 836 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 POPDC3Q9HBV1 291 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 NECTIN3Q9NQS3 549 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 PRDM9Q9NQV7 894 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 SMYD2Q9NRG4 433 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 LRFN1Q9P244 771 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 CTNNAL1Q9UBT7 734 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 TINAGQ9UJW2 476 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 SAR1BQ9Y6B6 198 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 FBN2P35556 2912 aa16.29■□□□□ 0.2
CHMP1A-205ENST00000548650 GTF3C1Q12789 2109 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 FAM227AF5H4B4 570 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 PSMD12O00232 456 aaPredicted RBP16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 CDK2AP1O14519 115 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 NME2P1O60361 137 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 SLC25A12O75746 678 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 PIAS1O75925 651 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 WDR47O94967 919 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 SP1P08047 785 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 NME2P22392 152 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 TNFRSF8P28908 595 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 GDF5P43026 501 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 MLF1P58340 268 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 ADORA2A-AS1P86434 159 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 ALDH6A1Q02252 535 aaKnown RBP16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 SLBPQ14493 270 aaKnown RBP eCLIP16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 C3AR1Q16581 482 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 BNC2Q6ZN30 1099 aaPredicted RBP16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 MRGPRGQ86SM5 289 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 ZNF227Q86WZ6 799 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 SCUBE1Q8IWY4 988 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 ZBED8Q8IZ13 594 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 ARMC10Q8N2F6 343 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 HORMAD2Q8N7B1 307 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 GAL3ST3Q96A11 431 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 MAGED4Q96JG8 741 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 TMEM79Q9BSE2 394 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 RHBGQ9H310 441 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 TRIM45Q9H8W5 580 aaPredicted RBP16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 GPAMQ9HCL2 828 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 NSMCE4AQ9NXX6 385 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 ZNF835Q9Y2P0 537 aa16.28■□□□□ 0.2
CHMP1A-205ENST00000548650 GNAZP19086 355 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms