RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SAMD15Q9P1V8 674 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 SOX13Q9UN79 622 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 DHRS7Q9Y394 339 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 HRH3Q9Y5N1 445 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 COMMD10Q9Y6G5 202 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 INTS1Q8N201 2190 aaKnown RBP15.8■□□□□ 0.12
VPS29-204ENST00000548259 TRBV11-1A0A0K0K1C0 115 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 CEP104O60308 925 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 ITGA10O75578 1167 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 SERPIND1P05546 499 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 RPL22P35268 128 aaKnown RBP15.79■□□□□ 0.12
VPS29-204ENST00000548259 PPIAP62937 165 aaKnown RBP15.79■□□□□ 0.12
VPS29-204ENST00000548259 FOXD4Q12950 439 aaPredicted RBP15.79■□□□□ 0.12
VPS29-204ENST00000548259 ZNF585AQ6P3V2 769 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 CASC4Q6P4E1 433 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 ARSKQ6UWY0 536 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 GSTA5Q7RTV2 222 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 SHISA5Q8N114 240 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 AFAP1L2Q8N4X5 818 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 ZNF740Q8NDX6 193 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 OR52N2Q8NGI0 321 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 ALKBH8Q96BT7 664 aaKnown RBP15.79■□□□□ 0.12
VPS29-204ENST00000548259 SYBUQ9NX95 663 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 YARS2Q9Y2Z4 477 aaKnown RBP15.79■□□□□ 0.12
VPS29-204ENST00000548259 L3MBTL1Q9Y468 752 aa15.79■□□□□ 0.12
VPS29-204ENST00000548259 TCRBV16S1A1N1A0A5B0 115 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 A8MVJ9 347 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 OR1F1O43749 312 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 LCMT2O60294 686 aaKnown RBP15.78■□□□□ 0.12
VPS29-204ENST00000548259 AVILO75366 819 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 HIST1H2AGP0C0S8 130 aaPredicted RBP15.78■□□□□ 0.12
VPS29-204ENST00000548259 CDH1P12830 882 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 RNH1P13489 461 aaKnown RBP15.78■□□□□ 0.12
VPS29-204ENST00000548259 HIST1H2ADP20671 130 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 KIR2DL3P43628 341 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 RGS4P49798 205 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 TERF2Q15554 542 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 EMC4Q5J8M3 183 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 NDUFAF5Q5TEU4 345 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 ZNF470Q6ECI4 717 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 UGT3A1Q6NUS8 523 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 GK5Q6ZS86 529 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 KIAA0408Q6ZU52 694 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 CENPUQ71F23 418 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 TAOK1Q7L7X3 1001 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 PRUNE1Q86TP1 453 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 BIVMQ86UB2 503 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 ZZZ3Q8IYH5 903 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 RPRMLQ8N4K4 120 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 PSD4Q8NDX1 1056 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 B3GNT7Q8NFL0 401 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 HES6Q96HZ4 224 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 HIST1H2AHQ96KK5 128 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 SMC6Q96SB8 1091 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 HIST1H2AJQ99878 128 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 TTYH2Q9BSA4 534 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 H2AFJQ9BTM1 129 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 TSPY26PQ9H489 355 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 HPF1Q9NWY4 346 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 HEATR5BQ9P2D3 2071 aa15.78■□□□□ 0.12
VPS29-204ENST00000548259 PRRC2AP48634 2157 aaKnown RBP15.77■□□□□ 0.12
VPS29-204ENST00000548259 C8GP07360 202 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 ZSCAN5DPP0CG00 497 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 OLR1P78380 273 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 NAE1Q13564 534 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 PHKG1Q16816 387 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 AGTRAPQ6RW13 159 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 LCTLQ6UWM7 567 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 CYHR1Q6ZMK1 362 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 MDGA2Q7Z553 956 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 STRA8Q7Z7C7 330 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 SLC13A5Q86YT5 568 aaPredicted RBP15.77■□□□□ 0.12
VPS29-204ENST00000548259 RNF214Q8ND24 703 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 NFAM1Q8NET5 270 aaPredicted RBP15.77■□□□□ 0.12
VPS29-204ENST00000548259 OR5M9Q8NGP3 310 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 VMP1Q96GC9 406 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 SLC30A3Q99726 388 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 GPATCH1Q9BRR8 931 aaKnown RBP15.77■□□□□ 0.12
VPS29-204ENST00000548259 PARVBQ9HBI1 364 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 RASSF1Q9NS23 344 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 PNPLA3Q9NST1 481 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 KCMF1Q9P0J7 381 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 B4GALT7Q9UBV7 327 aa15.77■□□□□ 0.12
VPS29-204ENST00000548259 ACANP16112 2415 aa15.77■□□□□ 0.11
VPS29-204ENST00000548259 TRBC2A0A5B9 178 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 MAGEB16A2A368 324 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 SYNDIG1LA6NDD5 238 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 A8MUA0 341 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 WDR1O75083 606 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 ZFAND5O76080 213 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 MYO1DO94832 1006 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 MAOAP21397 527 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 BTG2P78543 158 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 SP140Q13342 867 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 DHX34Q14147 1143 aaKnown RBP15.76■□□□□ 0.11
VPS29-204ENST00000548259 HECTD2Q5U5R9 776 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 FBXW10Q5XX13 1052 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 PIWIL4Q7Z3Z4 852 aaKnown RBP15.76■□□□□ 0.11
VPS29-204ENST00000548259 LMNTD2Q8IXW0 634 aa15.76■□□□□ 0.11
VPS29-204ENST00000548259 CPNE9Q8IYJ1 553 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms