RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ENTPD4Q9Y227 616 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 A0A0G2JPF8 293 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 TRBC2A0A5B9 178 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 CPSF4LA6NMK7 179 aaKnown RBP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 HNRNPCL3B7ZW38 293 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 HNRNPCL4P0DMR1 293 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 STAT5AP42229 794 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 HTR3AP46098 478 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 CDKN1CP49918 316 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 TAF10Q12962 218 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 TOMM5Q8N4H5 51 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 ISL2Q96A47 359 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 RHBGQ9H310 441 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 MRM3Q9HC36 420 aaKnown RBP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 ATPIF1Q9UII2 106 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 LOC105369274A0A096LPK9 316 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 L7N2F9 121 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 S100A6P06703 90 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 FCER2P06734 321 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 PRPS1L1P21108 318 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 PYCR3Q53H96 274 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 OR4N4Q8N0Y3 316 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 SRFBP1Q8NEF9 429 aaKnown RBP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 OR4K1Q8NGD4 311 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 KCTD13Q8WZ19 329 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 KCNH6Q9H252 994 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 NTN4Q9HB63 628 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 MBD2Q9UBB5 411 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 POLHQ9Y253 713 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 MAN2B2Q9Y2E5 1009 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 KNL1Q8NG31 2342 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 FZD9O00144 591 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 INSIG1O15503 277 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 MAN2A2P49641 1150 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 MANFP55145 182 aaKnown RBP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 RGMBQ6NW40 437 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 C2orf73Q8N5S3 287 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 B3GNT7Q8NFL0 401 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 GGHQ92820 318 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 HDHD5Q9BXW7 423 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 ELAC1Q9H777 363 aaKnown RBP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 CCSER2Q9H7U1 834 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 ZFYVE1Q9HBF4 777 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 ZSCAN32Q9NX65 697 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 SLC22A14Q9Y267 594 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 HCN4Q9Y3Q4 1203 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 ATP6V1G2-DDX39BF2Z307 99 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 HAS3O00219 553 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 NUDT14O95848 222 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 ANXA3P12429 323 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 FNTBP49356 437 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 MLLT6P55198 1093 aaPredicted RBP13.73□□□□□ -0.21
LIMS1-215ENST00000544547 FAPQ12884 760 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 ADAM15Q13444 863 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 KEAP1Q14145 624 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 GPR19Q15760 415 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 CRB2Q5IJ48 1285 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 CPZQ66K79 652 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 TMPRSS11BQ86T26 416 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 DUS3LQ96G46 650 aaKnown RBP13.73□□□□□ -0.21
LIMS1-215ENST00000544547 BTN2A3PQ96KV6 586 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 TSSK6Q9BXA6 273 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 PCDHB1Q9Y5F3 818 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 EEF1E1O43324 174 aaKnown RBP13.73□□□□□ -0.21
LIMS1-215ENST00000544547 LYRM1O43325 122 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 CXCR2P25025 360 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 CNR2P34972 360 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 CLCN4P51793 760 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 CAV3P56539 151 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 GALEQ14376 348 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 CARD16Q5EG05 197 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 FAM209AQ5JX71 171 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 NXNL2Q5VZ03 156 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 LHFPL3Q86UP9 236 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 CLECL1Q8IZS7 167 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 SLC7A6Q92536 515 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 MBOAT4Q96T53 435 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 GPRC5BQ9NZH0 403 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 TEX46H3BTG2 121 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 AKR7A2O43488 359 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 SSX4O60224 188 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 PAPSS2O95340 614 aaPredicted RBP13.73□□□□□ -0.21
LIMS1-215ENST00000544547 PDGFAP04085 211 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 GPR1P46091 355 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 CCR4P51679 360 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 SLC35A2P78381 396 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 IL10RBQ08334 325 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 HLA-DQA1Q5Y7H0 255 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 GTF2IRD2BQ6EKJ0 949 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 FBXL22Q6P050 247 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 GTF2IRD2Q86UP8 949 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 PTRH1Q86Y79 214 aaKnown RBP13.73□□□□□ -0.21
LIMS1-215ENST00000544547 PLCZ1Q86YW0 608 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 OR2T11Q8NH01 316 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 QRFPRQ96P65 431 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 TSGA13Q96PP4 275 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 C1QTNF7Q9BXJ2 289 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 DPAGT1Q9H3H5 408 aa13.73□□□□□ -0.21
LIMS1-215ENST00000544547 GORASP2Q9H8Y8 452 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms