RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 KBTBD12Q3ZCT8 623 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 FAM153CQ494X1 144 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 KHDC1LQ5JSQ8 128 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 TMTC4Q5T4D3 741 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 FAM69AQ5T7M9 428 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 UGT3A1Q6NUS8 523 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 NAPRTQ6XQN6 538 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 CCNI2Q6ZMN8 369 aaPredicted RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 TRMT10CQ7L0Y3 403 aaKnown RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 EFL1Q7Z2Z2 1120 aaKnown RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 SFTPA2Q8IWL1 248 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 GSPT2Q8IYD1 628 aaKnown RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 SFRP1Q8N474 314 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 ARL14Q8N4G2 192 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 LILRA3Q8N6C8 439 aaPredicted RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 TMCO5AQ8N6Q1 288 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 IFI44Q8TCB0 444 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 CPT1CQ8TCG5 803 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 SLC37A2Q8TED4 501 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 SKA2Q8WVK7 121 aaPredicted RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 ASZ1Q8WWH4 475 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 PATE1Q8WXA2 126 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 NAT6Q93015 286 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 FAM136AQ96C01 138 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 PERPQ96FX8 193 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 APOPT1Q96IL0 206 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 C12orf66Q96MD2 445 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 CYTH2Q99418 400 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 CPNE1Q99829 537 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 WWP1Q9H0M0 922 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 CDC42EP4Q9H3Q1 356 aaKnown RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 CHODLQ9H9P2 273 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 SLC17A6Q9P2U8 582 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 LRIT1Q9P2V4 623 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 WDR37Q9Y2I8 494 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 MTO1Q9Y2Z2 717 aaKnown RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 HEBP2Q9Y5Z4 205 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 A0A087WUV0 522 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 LY6G6EA0A0G2JKS1 128 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SLC5A10A0PJK1 596 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 A4D1N5 150 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 EME2A4GXA9 379 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 OR52A4PA6NMU1 304 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CXorf49A8MYA2 514 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 STX16-NPEPL1H3BU86 382 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 STX16O14662 325 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 HNRNPRO43390 633 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 DNPH1O43598 174 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 NUDT21O43809 227 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 NIPSNAP2O75323 286 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SEC22BO75396 215 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 PIAS1O75925 651 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 GP1BAP07359 652 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CDK4P11802 303 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 XRCC1P18887 633 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SAT1P21673 171 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 PDHA2P29803 388 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ALDH4A1P30038 563 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SKIV2L2P42285 1042 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ABCG1P45844 678 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 GP2P55259 537 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 VSNL1P62760 191 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 HHEXQ03014 270 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 DMTNQ08495 405 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ILKQ13418 452 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 NAB1Q13506 487 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CLCA4Q14CN2 919 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 RPE65Q16518 533 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 BAK1Q16611 211 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 TTLL9Q3SXZ7 439 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ZNF658BQ4V348 819 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 PLEKHS1Q5SXH7 462 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 GRTP1Q5TC63 336 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 THEMIS2Q5TEJ8 643 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 FAM45BPQ6NSW5 357 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 WDR93Q6P2C0 686 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 GUSBP11Q6P575 273 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ZNF549Q6P9A3 640 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ISLR2Q6UXK2 745 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 MEX3BQ6ZN04 569 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 LINC00346Q8IVM7 164 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ZBTB2Q8N680 514 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 Q8N9G6 341 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SIDT2Q8NBJ9 832 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 FAM45AQ8TCE6 357 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 LKAAEAR1Q8TD35 194 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CFHR4Q92496 578 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 KCNJ9Q92806 393 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 INPP5DQ92835 1189 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ATXN7L3BQ96GX2 97 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ELMO2Q96JJ3 720 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 FOPNLQ96NB1 174 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 TRAPPC9Q96Q05 1148 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ATP6V0BQ99437 205 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 NDNQ99608 321 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SLC38A3Q99624 504 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 C1orf43Q9BWL3 253 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 PARD6BQ9BYG5 372 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 TRIM54Q9BYV2 358 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 OR52A5Q9H2C5 316 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms