RNA–Protein interactions for RNA: ENST00000542848.5

PTPN6-219, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 5

Gene PTPN6, Length 656 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-219	ENST00000542848	PABPN1L	A6NDY0	278 aa	Known RBP	11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	URAD	A6NGE7	173 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	NDUFS4	O43181	175 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	PRMT3	O60678	531 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	TSPAN12	O95859	305 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	SNRPB2	P08579	225 aa	Known RBP	11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	CYB561	P49447	251 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	ST13	P50502	369 aa	Known RBP	11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	CDKN2D	P55273	166 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	RGS1	Q08116	209 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	MAPKAPK3	Q16644	382 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	DEFB134	Q4QY38	66 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	SPANXN3	Q5MJ09	141 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	RBM20	Q5T481	1227 aa	Known RBP	11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	RNASEH2B	Q5TBB1	312 aa	Known RBP	11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	QSOX2	Q6ZRP7	698 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	ABHD13	Q7L211	337 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	CNTN4	Q8IWV2	1026 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	GHDC	Q8N2G8	530 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	PHF10	Q8WUB8	498 aa	Known RBP	11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	PYCR2	Q96C36	320 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	FBXL8	Q96CD0	374 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	CAPZA3	Q96KX2	299 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	RUNDC3B	Q96NL0	473 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	PTCHD1	Q96NR3	888 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	OR4K3	Q96R72	315 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	OLFM1	Q99784	485 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	TRIM51	Q9BSJ1	452 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	RBCK1	Q9BYM8	510 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	TRIM8	Q9BZR9	551 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	ZFP69B	Q9UJL9	534 aa		11.12	□□□□□ -0.63
PTPN6-219	ENST00000542848	FREM3	P0C091	2139 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	ARHGAP21	Q5T5U3	1957 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	NME2P1	O60361	137 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	B4GALT2	O60909	372 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	DNAJB6	O75190	326 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	SLC25A12	O75746	678 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	SERPIND1	P05546	499 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	ENO2	P09104	434 aa	Predicted RBP	11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	ZNF888	P0CJ79	500 aa	Predicted RBP	11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	ABO	P16442	354 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	NME2	P22392	152 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	TPP2	P29144	1249 aa	Predicted RBP	11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	SSTR2	P30874	369 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	TRHR	P34981	398 aa	Predicted RBP	11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	SCTR	P47872	440 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	FNTA	P49354	379 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	MLF1	P58340	268 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	PDAP1	Q13442	181 aa	Known RBP	11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	CSHL1	Q14406	222 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	GLE1	Q53GS7	698 aa	Known RBP	11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	ZNF468	Q5VIY5	522 aa	Predicted RBP	11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	ZNF227	Q86WZ6	799 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	DOLPP1	Q86YN1	238 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	ZNF295-AS1	Q8N0V1	137 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	CYP4X1	Q8N118	509 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	EID3	Q8N140	333 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	ARMC10	Q8N2F6	343 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	POGLUT1	Q8NBL1	392 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	TRPV3	Q8NET8	790 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	UTP15	Q8TED0	518 aa	Known RBP	11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	SLC5A11	Q8WWX8	675 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	NEIL2	Q969S2	332 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	PDLIM5	Q96HC4	596 aa	Known RBP	11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	PRDM9	Q9NQV7	894 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	CORO1C	Q9ULV4	474 aa	Predicted RBP	11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	VWA7	Q9Y334	891 aa		11.11	□□□□□ -0.63
PTPN6-219	ENST00000542848	TCRBV16S1A1N1	A0A5B0	115 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	SAGE2P	A6NJ88	616 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848		E9PLN8	166 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	C19orf84	I3L1E1	186 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	FCHO1	O14526	889 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	DYNC1I1	O14576	645 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	PRRG2	O14669	202 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	B3GALT4	O96024	378 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	SMIM10L1	P0DMW3	83 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	RNH1	P13489	461 aa	Known RBP	11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	ZNF24	P17028	368 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	CAPN3	P20807	821 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	HLCS	P50747	726 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	OLR1	P78380	273 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	BTG2	P78543	158 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	PPP1R7	Q15435	360 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	CDSN	Q15517	529 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	RNFT1	Q5M7Z0	435 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	CATSPERE	Q5SY80	951 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	TEDDM1	Q5T9Z0	273 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	CHERP	Q8IWX8	916 aa	Known RBP	11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	KIF2B	Q8N4N8	673 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	MMGT1	Q8N4V1	131 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	NFAM1	Q8NET5	270 aa	Predicted RBP	11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	SPATA4	Q8NEY3	305 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	AGAP11	Q8TF27	550 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	TMEM125	Q96AQ2	219 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	CERS2	Q96G23	380 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	SMIM10	Q96HG1	83 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	SPOCK3	Q9BQ16	436 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	VKORC1	Q9BQB6	163 aa		11.1	□□□□□ -0.63
PTPN6-219	ENST00000542848	AIF1L	Q9BQI0	150 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms