RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 CUZD1Q86UP6 607 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 HOMEZQ8IX15 550 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 GPR135Q8IZ08 494 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 KRT78Q8N1N4 520 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 OR5T3Q8NGG3 340 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 OR9A4Q8NGU2 314 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 CT55Q8WUE5 264 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 FGF11Q92914 225 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 RERGQ96A58 199 aaPredicted RBP12.33□□□□□ -0.44
CCDC42-202ENST00000539522 MTFMTQ96DP5 389 aaKnown RBP12.33□□□□□ -0.44
CCDC42-202ENST00000539522 SORBS1Q9BX66 1292 aaKnown RBP12.33□□□□□ -0.44
CCDC42-202ENST00000539522 CHST8Q9H2A9 424 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 OR51B5Q9H339 312 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 PRDM7Q9NQW5 492 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 VTI1BQ9UEU0 232 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 ZDHHC2Q9UIJ5 367 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 HAO1Q9UJM8 370 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 MAU2Q9Y6X3 613 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 AHCTF1Q8WYP5 2266 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 SEC16AO15027 2179 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 A0A0G2JN53 185 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 A0A1B0GX78 115 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 STMND1H3BQB6 276 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 SAP18O00422 153 aaKnown RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 RTCAO00442 366 aaKnown RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 MANBAO00462 879 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 MAP3K7O43318 606 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 MLYCDO95822 493 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 JUNP05412 331 aaKnown RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 FGF4P08620 206 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 PCNAP12004 261 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 CXCR2P25025 360 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 CD82P27701 267 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 EIF2S3P41091 472 aaKnown RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 PIK3CBP42338 1070 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 PKNOX1P55347 436 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 RAB8AP61006 207 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 MAT1AQ00266 395 aaKnown RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 SLC9A5Q14940 896 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 ABRAXAS2Q15018 415 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 PAGE2BQ5JRK9 111 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 MANEAQ5SRI9 462 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 TMEM164Q5U3C3 297 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 GARNL3Q5VVW2 1013 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 KANK2Q63ZY3 851 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 FRG2Q64ET8 278 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 MRPL14Q6P1L8 145 aaKnown RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 ABHD17CQ6PCB6 329 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 SCIMPQ6UWF3 145 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 VASH2Q86V25 355 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 PROSER1Q86XN7 944 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 MYLK4Q86YV6 388 aaPredicted RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 NLGN4XQ8N0W4 816 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 KDF1Q8NAX2 398 aaPredicted RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 CAMKVQ8NCB2 501 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 TRPV3Q8NET8 790 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 NLGN4YQ8NFZ3 816 aaPredicted RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 N4BP2L2Q92802 583 aaPredicted RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 ATP6V1E2Q96A05 226 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 CLIP3Q96DZ5 547 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 NAF1Q96HR8 494 aaKnown RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 FAR2Q96K12 515 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 FRG2BQ96QU4 278 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 MESP1Q9BRJ9 268 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 NDC1Q9BTX1 674 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 NPHS2Q9NP85 383 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 PNPOQ9NVS9 261 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 IL17BQ9UHF5 180 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 STK38LQ9Y2H1 464 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 RAXQ9Y2V3 346 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 PCDHGA11Q9Y5H2 935 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 MRPS18BQ9Y676 258 aaKnown RBP12.32□□□□□ -0.44
CCDC42-202ENST00000539522 SLC22A7Q9Y694 548 aa12.32□□□□□ -0.44
CCDC42-202ENST00000539522 DSPP15924 2871 aaKnown RBP12.31□□□□□ -0.44
CCDC42-202ENST00000539522 ZNF860A6NHJ4 632 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 SGK494L7N484 410 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 FOXE1O00358 373 aaPredicted RBP12.31□□□□□ -0.44
CCDC42-202ENST00000539522 EBAG9O00559 213 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 PLPP1O14494 284 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 GALR3O60755 368 aaPredicted RBP12.31□□□□□ -0.44
CCDC42-202ENST00000539522 KLF7O75840 302 aaPredicted RBP12.31□□□□□ -0.44
CCDC42-202ENST00000539522 SERPIND1P05546 499 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 SLC35G6P0C7Q6 338 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 KITP10721 976 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 ALAS2P22557 587 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 GSTM2P28161 218 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 ARFIP2P53365 341 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 ARSFP54793 590 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 PCBP4P57723 403 aaKnown RBP12.31□□□□□ -0.44
CCDC42-202ENST00000539522 OLR1P78380 273 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 TBL3Q12788 808 aaKnown RBP12.31□□□□□ -0.44
CCDC42-202ENST00000539522 DDX39BQ13838 428 aaKnown RBP12.31□□□□□ -0.44
CCDC42-202ENST00000539522 RUNX2Q13950 521 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 FAM53BQ14153 422 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 NKAIN1Q4KMZ8 207 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 DEFB134Q4QY38 66 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 DEPDC1Q5TB30 811 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 YOD1Q5VVQ6 348 aaPredicted RBP12.31□□□□□ -0.44
CCDC42-202ENST00000539522 CYB5D1Q6P9G0 228 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 AMER2Q8N7J2 671 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms