RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 DNAJC11Q9NVH1 559 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 FBXL12Q9NXK8 326 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 PCDHGB6Q9Y5F9 930 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 PCDHGA6Q9Y5G7 932 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 ARHGEF33A8MVX0 844 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 NPIPB8E9PQR5 432 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 HOXC11O43248 304 aaPredicted RBP12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 POP4O95707 220 aaKnown RBP12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 LAMP1P11279 417 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 JUPP14923 745 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 IL1RNP18510 177 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 WEE1P30291 646 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 FEN1P39748 380 aaKnown RBP12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 KIR3DL1P43629 444 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 HNMTP50135 292 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 ABRQ12979 859 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 GANABQ14697 944 aaKnown RBP12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 DEFB115Q30KQ5 88 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 POM121L1PQ3SYA9 428 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 BCDIN3DQ7Z5W3 292 aaKnown RBP12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 OR9Q2Q8NGE9 314 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 FYTTD1Q96QD9 318 aaKnown RBP12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 PAK6Q9NQU5 681 aaPredicted RBP12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 HCFC2Q9Y5Z7 792 aa12.08□□□□□ -0.48
SFSWAP-208ENST00000539506 FPGTO14772 594 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 KIAA0513O60268 411 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 MPC1LP0DKB6 136 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 PIK3CBP42338 1070 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 PREPP48147 710 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 HNRNPFP52597 415 aaKnown RBP12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 RAE1P78406 368 aaKnown RBP12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 ST3GAL4Q11206 333 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 TSTA3Q13630 321 aaPredicted RBP12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 COL9A2Q14055 689 aaPredicted RBP12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 CNKSR3Q6P9H4 555 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 C11orf74Q86VG3 221 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 TP53I13Q8NBR0 393 aaPredicted RBP12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 C7orf57Q8NEG2 295 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 TXNDC15Q96J42 360 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 TRNT1Q96Q11 434 aaKnown RBP12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 NIPSNAP1Q9BPW8 284 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 TMEM246Q9BRR3 403 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 IL1RAPQ9NPH3 570 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 MUTYHQ9UIF7 546 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 NDRG4Q9ULP0 352 aaKnown RBP12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 TRAV19A0A0A6YYK7 116 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 TMEM229AB2RXF0 380 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 CCL16O15467 120 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 ZW10O43264 779 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 CTSLP07711 333 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 NAT1P18440 290 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 CXCR2P25025 360 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 CTSCP53634 463 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 DOC2AQ14183 400 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 TSTQ16762 297 aaKnown RBP12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 DUOXA1Q1HG43 343 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 IQCCQ4KMZ1 466 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 PLEKHS1Q5SXH7 462 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 CAPN13Q6MZZ7 669 aaPredicted RBP12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 LILRA6Q6PI73 481 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 GDPD4Q6W3E5 623 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 PRSS48Q7RTY5 328 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 SERPINA11Q86U17 422 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 IL17RDQ8NFM7 739 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 DNAJB8Q8NHS0 232 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 CYB5D2Q8WUJ1 264 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 CLIP3Q96DZ5 547 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 IL4I1Q96RQ9 567 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 ZNF221Q9UK13 617 aa12.07□□□□□ -0.48
SFSWAP-208ENST00000539506 EVPLLA8MZ36 301 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 M0QX08 132 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 EIF3FO00303 357 aaPredicted RBP12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 CCNDBP1O95273 360 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 C8AP07357 584 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 DNAJA1P31689 397 aaKnown RBP12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 KDELR2P33947 212 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 CD83Q01151 205 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 SLAMF1Q13291 335 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 ABI3BPQ7Z7G0 1075 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 METTL3Q86U44 580 aaKnown RBP12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 GLCCI1Q86VQ1 547 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 SYT12Q8IV01 421 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 SLC5A8Q8N695 610 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 UBASH3BQ8TF42 649 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 DEPDC7Q96QD5 511 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 CPNE5Q9HCH3 593 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 LEFTY1O75610 366 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 SLCO2B1O94956 709 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 JUNDP17535 347 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 GPX2P18283 190 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 GRK3P35626 688 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 SOX3P41225 446 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 CDH12P55289 794 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 IRF8Q02556 426 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 VMACQ2NL98 169 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 XKR6Q5GH73 641 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 SPANXN2Q5MJ10 180 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 PPP2R2DQ66LE6 453 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 TTC23LQ6PF05 361 aa12.06□□□□□ -0.48
SFSWAP-208ENST00000539506 THOC6Q86W42 341 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms