RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 C19orf25Q9UFG5 118 aaPredicted RBP13.94□□□□□ -0.18
USP28-204ENST00000537642 ZNF490Q9ULM2 529 aaPredicted RBP13.94□□□□□ -0.18
USP28-204ENST00000537642 ESPL1Q14674 2120 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 A0A096LPK6 155 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 CLEC3AO75596 197 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 GSTM2P28161 218 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 TYK2P29597 1187 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 HNRNPH1P31943 449 aaKnown RBP13.93□□□□□ -0.18
USP28-204ENST00000537642 GLRBP48167 497 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 STXBP1P61764 594 aaKnown RBP13.93□□□□□ -0.18
USP28-204ENST00000537642 ABRAXAS2Q15018 415 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 FAM83EQ2M2I3 478 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 XKR6Q5GH73 641 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 CRB2Q5IJ48 1285 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 ADNP2Q6IQ32 1131 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 RIPOR1Q6ZS17 1223 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 IQCKQ8N0W5 287 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 SIRT6Q8N6T7 355 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 RHEBL1Q8TAI7 183 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 CCT6BQ92526 530 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 TSLPQ969D9 159 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 MS4A6EQ96DS6 147 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 C19orf60Q96EN9 201 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 PTCD3Q96EY7 689 aaKnown RBP13.93□□□□□ -0.18
USP28-204ENST00000537642 GPR78Q96P69 363 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 EPS8L2Q9H6S3 715 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 CLK4Q9HAZ1 481 aaKnown RBP13.93□□□□□ -0.18
USP28-204ENST00000537642 PTGFRNQ9P2B2 879 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 NFU1Q9UMS0 254 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 PCDHGA10Q9Y5H3 936 aa13.93□□□□□ -0.18
USP28-204ENST00000537642 PRRC2CQ9Y520 2896 aaKnown RBP13.93□□□□□ -0.18
USP28-204ENST00000537642 FLNCQ14315 2725 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 A0A0G2JN53 185 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 LRIT2A6NDA9 550 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 ANKDD1BA6NHY2 528 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 MAGEB17A8MXT2 336 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 K7EPI3 171 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 VPS4BO75351 444 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 WFS1O76024 890 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 KLHL2O95198 593 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 INHBAP08476 426 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 ICAM2P13598 275 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 CASP2P42575 452 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 MAGEA12P43365 314 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 UQCRFS1P47985 274 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 IRF8Q02556 426 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 CHIT1Q13231 466 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 E2F2Q14209 437 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 ACAP2Q15057 778 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 NSDHLQ15738 373 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 TBCCQ15814 346 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 SFT2D3Q587I9 215 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 B3GNTL1Q67FW5 361 aaPredicted RBP13.92□□□□□ -0.18
USP28-204ENST00000537642 CA13Q8N1Q1 262 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 PLD6Q8N2A8 252 aaKnown RBP13.92□□□□□ -0.18
USP28-204ENST00000537642 CISD2Q8N5K1 135 aaKnown RBP13.92□□□□□ -0.18
USP28-204ENST00000537642 GALNT11Q8NCW6 608 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 UHMK1Q8TAS1 419 aaKnown RBP13.92□□□□□ -0.18
USP28-204ENST00000537642 DNAJB14Q8TBM8 379 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 GAL3ST3Q96A11 431 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 ISL2Q96A47 359 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 SNRNP40Q96DI7 357 aaKnown RBP13.92□□□□□ -0.18
USP28-204ENST00000537642 SEC16BQ96JE7 1060 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 PAFAH2Q99487 392 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 EFCAB11Q9BUY7 163 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 VPS11Q9H270 941 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 RHBGQ9H310 441 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 OPTCQ9UBM4 332 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 VPS4AQ9UN37 437 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 DOPEY2Q9Y3R5 2298 aa13.92□□□□□ -0.18
USP28-204ENST00000537642 FLNBO75369 2602 aaKnown RBP13.91□□□□□ -0.18
USP28-204ENST00000537642 CCDC189A1A4V9 331 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 CLEC18AA5D8T8 446 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 SYCE1LA8MT33 242 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 FAM227AF5H4B4 570 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 ERI3O43414 337 aaKnown RBP13.91□□□□□ -0.18
USP28-204ENST00000537642 B4GALT2O60909 372 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 RNH1P13489 461 aaKnown RBP13.91□□□□□ -0.18
USP28-204ENST00000537642 GNLYP22749 145 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 JAK1P23458 1154 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 SERPINB9P50453 376 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 AP2B1P63010 937 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 BTN3A2P78410 334 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 BTG2P78543 158 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 SRSF1Q07955 248 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP28-204ENST00000537642 PCDH1Q08174 1060 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 LAPTM5Q13571 262 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 RUNX2Q13950 521 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 BTBD16Q32M84 506 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 ADPRMQ3LIE5 342 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 PLAG1Q6DJT9 500 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 PAPD4Q6PIY7 484 aaKnown RBP13.91□□□□□ -0.18
USP28-204ENST00000537642 CLEC18BQ6UXF7 455 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 QSOX2Q6ZRP7 698 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 CLEC18CQ8NCF0 446 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 CATSPER1Q8NEC5 780 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 DCAKDQ8WVC6 231 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 CNDP1Q96KN2 507 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 QRFPRQ96P65 431 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 ASF1BQ9NVP2 202 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms