RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 RGMAQ96B86 450 aa19.77■□□□□ 0.76
VPS28-209ENST00000528142 DPH7Q9BTV6 452 aa19.77■□□□□ 0.76
VPS28-209ENST00000528142 AICDAQ9GZX7 198 aa19.77■□□□□ 0.76
VPS28-209ENST00000528142 SPASTQ9UBP0 616 aa19.77■□□□□ 0.76
VPS28-209ENST00000528142 ADAM29Q9UKF5 820 aa19.77■□□□□ 0.76
VPS28-209ENST00000528142 TRBV23OR9-2A0A075B6M9 112 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 BTN3A3O00478 584 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 HAT1O14929 419 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 RAP2AP10114 183 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 CMPK1P30085 196 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 MAPK12P53778 367 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 ILF3Q12906 894 aaKnown RBP eCLIP19.76■□□□□ 0.75
VPS28-209ENST00000528142 EIF2B5Q13144 721 aaKnown RBP19.76■□□□□ 0.75
VPS28-209ENST00000528142 NKG7Q16617 165 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 NRF1Q16656 503 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 FAM98BQ52LJ0 330 aaKnown RBP19.76■□□□□ 0.75
VPS28-209ENST00000528142 INTS11Q5TA45 600 aaKnown RBP19.76■□□□□ 0.75
VPS28-209ENST00000528142 KIAA1614Q5VZ46 1190 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 ZNF425Q6IV72 752 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 ENPP6Q6UWR7 440 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 ZBTB49Q6ZSB9 765 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 ZZZ3Q8IYH5 903 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 MMP21Q8N119 569 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 OR4A15Q8NGL6 344 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 N4BP2L2Q92802 583 aaPredicted RBP19.76■□□□□ 0.75
VPS28-209ENST00000528142 CIDECQ96AQ7 238 aaPredicted RBP19.76■□□□□ 0.75
VPS28-209ENST00000528142 QRFPRQ96P65 431 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 UGT2B28Q9BY64 529 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 AASDHPPTQ9NRN7 309 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 OLAHQ9NV23 265 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 ZNF282Q9UDV7 671 aaPredicted RBP19.76■□□□□ 0.75
VPS28-209ENST00000528142 VPS4AQ9UN37 437 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 SPTY2D1-AS1A0A0U1RR47 76 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 A0A1W2PPC4 97 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 LRIT2A6NDA9 550 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 MT-ND1P03886 318 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 HOXB3P14651 431 aaPredicted RBP19.76■□□□□ 0.75
VPS28-209ENST00000528142 GSTM2P28161 218 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 GRK3P35626 688 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 NUDT1P36639 197 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 HBA1P69905 142 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 ADRM1Q16186 407 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 IYDQ6PHW0 289 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 PTOV1Q86YD1 416 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 RLN3Q8WXF3 142 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 CHST8Q9H2A9 424 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 TCEAL2Q9H3H9 227 aaPredicted RBP19.76■□□□□ 0.75
VPS28-209ENST00000528142 DDX31Q9H8H2 851 aaKnown RBP19.76■□□□□ 0.75
VPS28-209ENST00000528142 LTB4R2Q9NPC1 389 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 BATF3Q9NR55 127 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 AP4B1Q9Y6B7 739 aa19.76■□□□□ 0.75
VPS28-209ENST00000528142 IGHV1OR15-9A0A0B4J2B8 117 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 SAC3D1A6NKF1 404 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 EIF4E1BA6NMX2 242 aaKnown RBP19.75■□□□□ 0.75
VPS28-209ENST00000528142 ISM1B1AKI9 464 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 SOCS2O14508 198 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 ACOX3O15254 700 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 TBX19O60806 448 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 ZNF217O75362 1048 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 C6orf47O95873 294 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 ABCB1P08183 1280 aaPredicted RBP19.75■□□□□ 0.75
VPS28-209ENST00000528142 IL1RNP18510 177 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 DDCP20711 480 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 PPIBP23284 216 aaKnown RBP19.75■□□□□ 0.75
VPS28-209ENST00000528142 AHRP35869 848 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 CHRNB3Q05901 458 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 HYAL2Q12891 473 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 FZD2Q14332 565 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 VMACQ2NL98 169 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 ZCCHC8Q6NZY4 707 aaKnown RBP19.75■□□□□ 0.75
VPS28-209ENST00000528142 NUDT13Q86X67 352 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 PACRGLQ8N7B6 248 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 FBXO30Q8TB52 745 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 NCLNQ969V3 563 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 TRIM4Q9C037 500 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 SLC6A16Q9GZN6 736 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 SRMSQ9H3Y6 488 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 TAAR2Q9P1P5 351 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 SNX7Q9UNH6 387 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 MRPS17Q9Y2R5 130 aaKnown RBP19.75■□□□□ 0.75
VPS28-209ENST00000528142 AP1M2Q9Y6Q5 423 aa19.75■□□□□ 0.75
VPS28-209ENST00000528142 ARHGAP10A1A4S6 786 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 MAGEA13PA6NCF6 341 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 TXNDC9O14530 226 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 TMPRSS11DO60235 418 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 PRKD3O94806 890 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 LDLRP01130 860 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 STARD6P59095 220 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 MRPS35P82673 323 aaKnown RBP19.74■□□□□ 0.75
VPS28-209ENST00000528142 ADPRMQ3LIE5 342 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 TMEM35AQ53FP2 167 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 OR4C11Q6IEV9 310 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 ERICH5Q6P6B1 374 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 SPRED1Q7Z699 444 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 CLEC4FQ8N1N0 589 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 MARVELD2Q8N4S9 558 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 FAM160A2Q8N612 972 aaPredicted RBP19.74■□□□□ 0.75
VPS28-209ENST00000528142 FAM47BQ8NA70 645 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 FLVCR1-AS1Q8TAF5 88 aa19.74■□□□□ 0.75
VPS28-209ENST00000528142 PNPT1Q8TCS8 783 aaKnown RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms