RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SLC34A2O95436 690 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 GSTM5P46439 218 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 ARF3P61204 181 aaPredicted RBP20.02■□□□□ 0.8
VPS28-208ENST00000527797 GPLD1P80108 840 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 C2orf80Q0P641 193 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 CPTPQ5TA50 214 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 FRMPD2BQ6IN97 320 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 FAM71E1Q6IPT2 247 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 PGM2L1Q6PCE3 622 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 MSANTD1Q6ZTZ1 278 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 R3HCC1LQ7Z5L2 792 aaKnown RBP20.02■□□□□ 0.8
VPS28-208ENST00000527797 OR4N4Q8N0Y3 316 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 FBXW8Q8N3Y1 598 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 ZNF655Q8N720 491 aaPredicted RBP20.02■□□□□ 0.8
VPS28-208ENST00000527797 GAL3ST3Q96A11 431 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 TEFMQ96QE5 360 aaKnown RBP20.02■□□□□ 0.8
VPS28-208ENST00000527797 CD180Q99467 661 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 GPATCH1Q9BRR8 931 aaKnown RBP20.02■□□□□ 0.8
VPS28-208ENST00000527797 ARRDC1-AS1Q9H2J1 176 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 SPAG4Q9NPE6 437 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 PRDM7Q9NQW5 492 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 ADA2Q9NZK5 511 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 ATP6V1HQ9UI12 483 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 RAB23Q9ULC3 237 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 PCDHGA5Q9Y5G8 931 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 A0A0G2JN53 185 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 DUX1O43812 170 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 CIB2O75838 187 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 KCNH1O95259 989 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 TSFMP43897 325 aaKnown RBP20.02■□□□□ 0.79
VPS28-208ENST00000527797 TRA2BP62995 288 aaKnown RBP20.02■□□□□ 0.79
VPS28-208ENST00000527797 PHC1P78364 1004 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 ZC3H12BQ5HYM0 836 aaKnown RBP20.02■□□□□ 0.79
VPS28-208ENST00000527797 CAMKMTQ7Z624 323 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 DHDDSQ86SQ9 333 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 Q8N9G6 341 aaPredicted RBP20.02■□□□□ 0.79
VPS28-208ENST00000527797 FAM181AQ8N9Y4 354 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 KCT2Q8NC54 265 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 OR8J2Q8NGG1 315 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 OR2I1PQ8NGU4 316 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 GTF2H4Q92759 462 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 TCTN2Q96GX1 697 aa20.02■□□□□ 0.79
VPS28-208ENST00000527797 GTPBP2Q9BX10 602 aaKnown RBP20.02■□□□□ 0.79
VPS28-208ENST00000527797 A0A0A6YYD5 115 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 TLCD2A6NGC4 264 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 FXYD1O00168 92 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 B4GAT1O43505 415 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 SIGLEC6O43699 453 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 PDE5AO76074 875 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 IL3P08700 152 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 PNLIPP16233 465 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 MTTPP55157 894 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 GFERP55789 205 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 CAPRIN1Q14444 709 aaKnown RBP20.01■□□□□ 0.79
VPS28-208ENST00000527797 AMZ1Q400G9 498 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 MANEAQ5SRI9 462 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 C6orf10Q5SRN2 563 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 OR4F3Q6IEY1 312 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 EFCAB3Q8N7B9 438 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 DNAJB8Q8NHS0 232 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 TMEM131Q92545 1883 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 CCDC74AQ96AQ1 378 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 TM4SF18Q96CE8 201 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 COQ8BQ96D53 544 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 MTERF3Q96E29 417 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 ITCHQ96J02 903 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 CCDC3Q9BQI4 270 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 SLC39A3Q9BRY0 314 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 DUSP26Q9BV47 211 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 ZMYND15Q9H091 742 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 C11orf16Q9NQ32 467 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 FAM120CQ9NX05 1096 aaKnown RBP20.01■□□□□ 0.79
VPS28-208ENST00000527797 SLC7A8Q9UHI5 535 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 EXO1Q9UQ84 846 aaKnown RBP20.01■□□□□ 0.79
VPS28-208ENST00000527797 R4GN57 208 aa20.01■□□□□ 0.79
VPS28-208ENST00000527797 HEATR5BQ9P2D3 2071 aa20■□□□□ 0.79
VPS28-208ENST00000527797 TNFRSF10AO00220 468 aa20■□□□□ 0.79
VPS28-208ENST00000527797 KHNYNO15037 678 aaKnown RBP20■□□□□ 0.79
VPS28-208ENST00000527797 ZSCAN9O15535 394 aaPredicted RBP20■□□□□ 0.79
VPS28-208ENST00000527797 KIF1CO43896 1103 aaKnown RBP20■□□□□ 0.79
VPS28-208ENST00000527797 TMPRSS11DO60235 418 aa20■□□□□ 0.79
VPS28-208ENST00000527797 PCDHGA12O60330 932 aa20■□□□□ 0.79
VPS28-208ENST00000527797 EIF2S1P05198 315 aaKnown RBP20■□□□□ 0.79
VPS28-208ENST00000527797 LAMP1P11279 417 aa20■□□□□ 0.79
VPS28-208ENST00000527797 PIM1P11309 404 aaPredicted RBP20■□□□□ 0.79
VPS28-208ENST00000527797 HIST1H1TP22492 207 aaPredicted RBP20■□□□□ 0.79
VPS28-208ENST00000527797 ATP5A1P25705 553 aaKnown RBP20■□□□□ 0.79
VPS28-208ENST00000527797 RAB8AP61006 207 aa20■□□□□ 0.79
VPS28-208ENST00000527797 PLIN5Q00G26 463 aa20■□□□□ 0.79
VPS28-208ENST00000527797 SLC9A5Q14940 896 aa20■□□□□ 0.79
VPS28-208ENST00000527797 CCDC6Q16204 474 aa20■□□□□ 0.79
VPS28-208ENST00000527797 ZC3H14Q6PJT7 736 aaKnown RBP20■□□□□ 0.79
VPS28-208ENST00000527797 DLEU7Q6UYE1 221 aa20■□□□□ 0.79
VPS28-208ENST00000527797 ZNF793Q6ZN11 406 aa20■□□□□ 0.79
VPS28-208ENST00000527797 PLXDC1Q8IUK5 500 aa20■□□□□ 0.79
VPS28-208ENST00000527797 EID2Q8N6I1 236 aa20■□□□□ 0.79
VPS28-208ENST00000527797 PPCDCQ96CD2 204 aa20■□□□□ 0.79
VPS28-208ENST00000527797 NLNQ9BYT8 704 aa20■□□□□ 0.79
VPS28-208ENST00000527797 ROGDIQ9GZN7 287 aa20■□□□□ 0.79
VPS28-208ENST00000527797 KCNH6Q9H252 994 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms