RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 CYP4X1Q8N118 509 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 TCAIMQ8N3R3 496 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 TEX9Q8N6V9 391 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 EFCAB3Q8N7B9 438 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 CEP112Q8N8E3 955 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 PDPRQ8NCN5 879 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 SLC44A1Q8WWI5 657 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 PNPLA2Q96AD5 504 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 SNRNP40Q96DI7 357 aaKnown RBP10.83□□□□□ -0.68
VCAN-212ENST00000515397 SMIM10Q96HG1 83 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 IMMP1LQ96LU5 166 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 GPR78Q96P69 363 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 F2RL3Q96RI0 385 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 PAFAH2Q99487 392 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 ILKAPQ9H0C8 392 aaPredicted RBP10.83□□□□□ -0.68
VCAN-212ENST00000515397 ZNF700Q9H0M5 742 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 CNOT10Q9H9A5 744 aaKnown RBP10.83□□□□□ -0.68
VCAN-212ENST00000515397 ASF1BQ9NVP2 202 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 CPSF2Q9P2I0 782 aaKnown RBP10.83□□□□□ -0.68
VCAN-212ENST00000515397 B3GNT3Q9Y2A9 372 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 NTNG1Q9Y2I2 539 aa10.83□□□□□ -0.68
VCAN-212ENST00000515397 A0A087X1B8 175 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 LOC102723996A0A087X1L8 192 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 LRIT2A6NDA9 550 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 ANKDD1BA6NHY2 528 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 TRIM49D1C9J1S8 452 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 SAP18O00422 153 aaKnown RBP10.82□□□□□ -0.68
VCAN-212ENST00000515397 RTCAO00442 366 aaKnown RBP10.82□□□□□ -0.68
VCAN-212ENST00000515397 ERI3O43414 337 aaKnown RBP10.82□□□□□ -0.68
VCAN-212ENST00000515397 MAN1A2O60476 641 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 KERAO60938 352 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 WFS1O76024 890 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 SIX3O95343 332 aaPredicted RBP10.82□□□□□ -0.68
VCAN-212ENST00000515397 SERPINA7P05543 415 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 FHP07954 510 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 PCNAP12004 261 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 GFAPP14136 432 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 MAOAP21397 527 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 MSH2P43246 934 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 HNRNPFP52597 415 aaKnown RBP10.82□□□□□ -0.68
VCAN-212ENST00000515397 ACTN3Q08043 901 aaPredicted RBP10.82□□□□□ -0.68
VCAN-212ENST00000515397 ILF2Q12905 390 aaKnown RBP10.82□□□□□ -0.68
VCAN-212ENST00000515397 MRPL49Q13405 166 aaKnown RBP10.82□□□□□ -0.68
VCAN-212ENST00000515397 FAM83EQ2M2I3 478 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 BTBD16Q32M84 506 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 SFT2D3Q587I9 215 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 IGFL3Q6UXB1 125 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 ISLR2Q6UXK2 745 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 RELL1Q8IUW5 271 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 KRT78Q8N1N4 520 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 CA13Q8N1Q1 262 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 DCAKDQ8WVC6 231 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 SREK1Q8WXA9 508 aaKnown RBP10.82□□□□□ -0.68
VCAN-212ENST00000515397 TBC1D20Q96BZ9 403 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 MS4A6EQ96DS6 147 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 VPS50Q96JG6 964 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 PTCHD1Q96NR3 888 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 WDR77Q9BQA1 342 aaPredicted RBP10.82□□□□□ -0.68
VCAN-212ENST00000515397 FAM129AQ9BZQ8 928 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 NUDT4Q9NZJ9 180 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 OPTCQ9UBM4 332 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 DOPEY2Q9Y3R5 2298 aa10.82□□□□□ -0.68
VCAN-212ENST00000515397 USP9XQ93008 2570 aaPredicted RBP10.81□□□□□ -0.68
VCAN-212ENST00000515397 COL12A1Q99715 3063 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 FOXO6A8MYZ6 492 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 TCP11X1B4DZS4 312 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 K7EPI3 171 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 VPS4BO75351 444 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 IPO13O94829 963 aaKnown RBP10.81□□□□□ -0.68
VCAN-212ENST00000515397 KLHL2O95198 593 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 TGFB1P01137 390 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 GCAP28676 217 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 PIK3CGP48736 1102 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 SERPINB8P50452 374 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 OR4D2P58180 307 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 SRSF1Q07955 248 aaKnown RBP eCLIP10.81□□□□□ -0.68
VCAN-212ENST00000515397 DDX39BQ13838 428 aaKnown RBP10.81□□□□□ -0.68
VCAN-212ENST00000515397 EIF2S3LQ2VIR3 472 aaKnown RBP10.81□□□□□ -0.68
VCAN-212ENST00000515397 CDKL4Q5MAI5 379 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 Q6ZS92 163 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 RPS27LQ71UM5 84 aaKnown RBP10.81□□□□□ -0.68
VCAN-212ENST00000515397 MYLK4Q86YV6 388 aaPredicted RBP10.81□□□□□ -0.68
VCAN-212ENST00000515397 IFT20Q8IY31 132 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 FAM47BQ8NA70 645 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 TMEM52Q8NDY8 209 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 PLPP5Q8NEB5 264 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 OR1N1Q8NGS0 311 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 PHF21BQ96EK2 531 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 PTCD3Q96EY7 689 aaKnown RBP10.81□□□□□ -0.68
VCAN-212ENST00000515397 FAR2Q96K12 515 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 SCYL1Q96KG9 808 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 SORBS1Q9BX66 1292 aaKnown RBP10.81□□□□□ -0.68
VCAN-212ENST00000515397 CAPS2Q9BXY5 557 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 FUT8Q9BYC5 575 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 TSPYL1Q9H0U9 437 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 EPS8L2Q9H6S3 715 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 NECTIN3Q9NQS3 549 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 RIC8BQ9NVN3 520 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 ANKRD10Q9NXR5 420 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 GPRC5BQ9NZH0 403 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms