RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 FAM217AQ8IXS0 508 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 WDR36Q8NI36 951 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 VANGL1Q8TAA9 524 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 VOPP1Q96AW1 172 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 FAM129BQ96TA1 746 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CTRCQ99895 268 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 FAM83DQ9H4H8 585 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 MTG2Q9H4K7 406 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 STOX2Q9P2F5 926 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 PADI2Q9Y2J8 665 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 A8MV72 311 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 TSPAN6O43657 245 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 HLA-FP30511 346 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 ETV3P41162 512 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PIK3CBP42338 1070 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 SCARB2Q14108 478 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PTGES3Q15185 160 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 MICAQ29983 383 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 SYTL3Q4VX76 610 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PNCKQ6P2M8 343 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 KLHL17Q6TDP4 642 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 HSD11B1LQ7Z5J1 315 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 GATAD2AQ86YP4 633 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF513Q8N8E2 541 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 TXNDC15Q96J42 360 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 VPS35Q96QK1 796 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 CNPPD1Q9BV87 410 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 CHST8Q9H2A9 424 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 TP63Q9H3D4 680 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PLCXD1Q9NUJ7 323 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 IGLV3-16A0A075B6K0 115 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 LOC110117498-PIK3R3F6TDL0 507 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 AP3D1O14617 1153 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 HAT1O14929 419 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 KPNA5O15131 536 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 KMOO15229 486 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 ABLIM3O94929 683 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 IGFBP1P08833 259 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 MPC1LP0DKB6 136 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PDHA2P29803 388 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 CNR2P34972 360 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PCGF2P35227 344 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 CASP3P42574 277 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF45Q02386 682 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 C2orf80Q0P641 193 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 BCL2A1Q16548 175 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PTCHD4Q6ZW05 846 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 RNF130Q86XS8 419 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 AQP11Q8NBQ7 271 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 IGSF21Q96ID5 467 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 LYSMD1Q96S90 227 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PKP4Q99569 1192 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 MRPL9Q9BYD2 267 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 HOXD1Q9GZZ0 328 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PCDH10Q9P2E7 1040 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 POFUT2Q9Y2G5 429 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PCDHGA3Q9Y5H0 932 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 BACE2Q9Y5Z0 518 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 APOA1P02647 267 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 MVDP53602 400 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 SLC5A12Q1EHB4 618 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 PLEKHS1Q5SXH7 462 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 ANXA8L1Q5VT79 327 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 C22orf39Q6P5X5 142 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 TTC23LQ6PF05 361 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 Q6ZNB5 142 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 TAGAPQ8N103 731 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 DEPDC4Q8N2C3 294 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 C2orf73Q8N5S3 287 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 NEIL2Q969S2 332 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 TMEM159Q96B96 161 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 DDX28Q9NUL7 540 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 KLHL42Q9P2K6 505 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 ITGB1BP2Q9UKP3 347 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 CFAP20Q9Y6A4 193 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 MYO7AQ13402 2215 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 SGTAO43765 313 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 MFN2O95140 757 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 SOX14O95416 240 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 CHI3L1P36222 383 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 EPHB3P54753 998 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 DAB2P98082 770 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 CDK6Q00534 326 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 STARD3Q14849 445 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 TEAD4Q15561 434 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 GCNT6Q5T4J0 391 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 RIOK2Q9BVS4 552 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 NEK6Q9HC98 313 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 ANKHQ9HCJ1 492 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 BTNL2Q9UIR0 455 aa8.88□□□□□ -0.99
LIMCH1-215ENST00000512632 WWP2O00308 870 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 NRG2O14511 850 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 ARHGAP33O14559 1287 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 GADD45GO95257 159 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 GASTP01350 101 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 SLC10A3P09131 477 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF8P17098 575 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 HNF4AP41235 474 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 ASMTP46597 345 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms