RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PTBP3O95758 552 aaKnown RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 USP17L8P0C7I0 530 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 GIMD1P0DJR0 217 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 TPSB2P20231 275 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 MYF6P23409 242 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 ARR3P36575 388 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 MEOX2P50222 304 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 FXR2P51116 673 aaKnown RBP eCLIP3.47□□□□□ -1.85
USP53-205ENST00000509769 FABP6P51161 128 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 POLR2HP52434 150 aaKnown RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 RRAS2P62070 204 aaPredicted RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 ACTG2P63267 376 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 BST1Q10588 318 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 DOC2AQ14183 400 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 LASP1Q14847 261 aaKnown RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 TPSAB1Q15661 275 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 TMEM183BQ1AE95 376 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 PABPC1L2AQ5JQF8 200 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 GCNT6Q5T4J0 391 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 GLT8D1Q68CQ7 371 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 PDXDC2PQ6P474 469 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 ENPP7Q6UWV6 458 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 CYP2R1Q6VVX0 501 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 IL34Q6ZMJ4 242 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 STRADAQ7RTN6 431 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 NAA40Q86UY6 237 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 JAZF1Q86VZ6 243 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 KCNMB4Q86W47 210 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 CPNE8Q86YQ8 564 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 FAM58AQ8N1B3 248 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 FTMTQ8N4E7 242 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 JOSD2Q8TAC2 188 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 XAGE3Q8WTP9 111 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 SLC44A1Q8WWI5 657 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 MARC2Q969Z3 335 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 PRICKLE1Q96MT3 831 aaPredicted RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 UHRF2Q96PU4 802 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 PANX1Q96RD7 426 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 PCYT2Q99447 389 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 LRFN3Q9BTN0 628 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 NDC1Q9BTX1 674 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 CNTNAP3Q9BZ76 1288 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 ADAM19Q9H013 955 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 TOLLIPQ9H0E2 274 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 ADAM7Q9H2U9 754 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 CRLF2Q9HC73 371 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 PDE7BQ9NP56 450 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 RXFP3Q9NSD7 469 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 ACOXLQ9NUZ1 547 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 ZIM2Q9NZV7 527 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 GMPR2Q9P2T1 348 aaKnown RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 ZNF282Q9UDV7 671 aaPredicted RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 ZMYM5Q9UJ78 669 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 CRLS1Q9UJA2 301 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 VPS28Q9UK41 221 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 PCDHA6Q9UN73 950 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 EXO1Q9UQ84 846 aaKnown RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 HIF3AQ9Y2N7 669 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 RIPK3Q9Y572 518 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 KCTD3Q9Y597 815 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 MEGF6O75095 1541 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 GRIN2DO15399 1336 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 UNC119BA6NIH7 251 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 LRRC10BA6NIK2 292 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 TCAPO15273 167 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 MFSD11O43934 449 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 SEC22BO75396 215 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 UPP2O95045 317 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 TDP2O95551 362 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 HLA-HP01893 362 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 RPLP1P05386 114 aaKnown RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 URODP06132 367 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 DAOP14920 347 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 PDX1P52945 283 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 HERVK_113P62684 666 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 SUMO1P63165 101 aaKnown RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 TEKQ02763 1124 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 CTDSPL2Q05D32 466 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 MAD2L1BPQ15013 274 aaPredicted RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 GALNTL6Q49A17 601 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 SLC9B1Q4ZJI4 515 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 LRRC73Q5JTD7 316 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 FOXR1Q6PIV2 292 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 BBS12Q6ZW61 710 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 NDUFAF7Q7L592 441 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 REC114Q7Z4M0 266 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 RALGPS2Q86X27 583 aaPredicted RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 RNF130Q86XS8 419 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 FAM217AQ8IXS0 508 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 SLC43A3Q8NBI5 491 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 FBXO15Q8NCQ5 510 aaPredicted RBP3.47□□□□□ -1.85
USP53-205ENST00000509769 ENGASEQ8NFI3 743 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 OR56B2PQ8NGI1 322 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 WDR48Q8TAF3 677 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 SLC2A14Q8TDB8 520 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 OR1E3Q8WZA6 343 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 SHC3Q92529 594 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 MARVELD3Q96A59 401 aa3.47□□□□□ -1.85
USP53-205ENST00000509769 AZIN2Q96A70 460 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms