RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 C18orf21Q32NC0 220 aaPredicted RBP12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 SPINK14Q6IE38 97 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 TICAM1Q8IUC6 712 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 KLHDC8AQ8IYD2 350 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 ZBED8Q8IZ13 594 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 KIF2BQ8N4N8 673 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 CREB3L4Q8TEY5 395 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 RHBDF1Q96CC6 855 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 CCDC120Q96HB5 630 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 SMIM10Q96HG1 83 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 EGFL8Q99944 293 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 KLHL31Q9H511 634 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 POPDC3Q9HBV1 291 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 GPAMQ9HCL2 828 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 KLHL1Q9NR64 748 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 NSMCE4AQ9NXX6 385 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 KCNE2Q9Y6J6 123 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 CSMD2Q7Z408 3487 aa12.2□□□□□ -0.46
HMGCS1-205ENST00000508319 DCHS2Q6V1P9 2916 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 TRGV8A0A0C4DH27 118 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 ASPDHA6ND91 283 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 SAGE2PA6NJ88 616 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 PRMT3O60678 531 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 RNH1P13489 461 aaKnown RBP12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 MAOAP21397 527 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 GDF5P43026 501 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 CA7P43166 264 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 TAS2R50P59544 299 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 BTG2P78543 158 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.19□□□□□ -0.461e-11■□□□□ 10.8
HMGCS1-205ENST00000508319 SLCO4C1Q6ZQN7 724 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 CAPN12Q6ZSI9 719 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 SLC34A3Q8N130 599 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 CA13Q8N1Q1 262 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 ITLN2Q8WWU7 325 aaPredicted RBP12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 FRMD6Q96NE9 622 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 PTCHD1Q96NR3 888 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 KRT12Q99456 494 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 UNKQ9C0B0 810 aaKnown RBP12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 CLK4Q9HAZ1 481 aaKnown RBP12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 CTNNAL1Q9UBT7 734 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 PYCARDQ9ULZ3 195 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 ENTPD4Q9Y227 616 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 SNX24Q9Y343 169 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 PKDREJQ9NTG1 2253 aa12.19□□□□□ -0.46
HMGCS1-205ENST00000508319 CACNA1CQ13936 2221 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 ADGRG4Q8IZF6 3080 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 URADA6NGE7 173 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 CXorf49A8MYA2 514 aaPredicted RBP12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 PRSS44E7EML9 344 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 FAM227AF5H4B4 570 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 NDC80O14777 642 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 SLC19A2O60779 497 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 WDR47O94967 919 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 CD46P15529 392 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 GNAZP19086 355 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 EEF1DP29692 281 aaKnown RBP12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 HNRNPH1P31943 449 aaKnown RBP12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 PAFAH1B1P43034 410 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 MRPS25P82663 173 aaKnown RBP12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 RBBP5Q15291 538 aaKnown RBP12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 TGFBIQ15582 683 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 TOR1AIP1Q5JTV8 583 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 ZNF468Q5VIY5 522 aaPredicted RBP12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 FRA10AC1Q70Z53 315 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 SIAH3Q8IW03 269 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 TMEM178AQ8NBL3 297 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 NFAM1Q8NET5 270 aaPredicted RBP12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 THAP3Q8WTV1 239 aaPredicted RBP12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 GAL3ST3Q96A11 431 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 TMEM79Q9BSE2 394 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 DERL2Q9GZP9 239 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 TSPAN10Q9H1Z9 355 aaPredicted RBP12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 CDCP1Q9H5V8 836 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 CAB39LQ9H9S4 337 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 NECTIN3Q9NQS3 549 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 PRDM9Q9NQV7 894 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 COPG2Q9UBF2 871 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 SH3BGRL2Q9UJC5 107 aa12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 MTO1Q9Y2Z2 717 aaKnown RBP12.18□□□□□ -0.46
HMGCS1-205ENST00000508319 OTOGQ6ZRI0 2925 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 GTF3C1Q12789 2109 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 A0A0G2JN53 185 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 NCF1BA6NI72 391 aaPredicted RBP12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 NCF1CA8MVU1 366 aaPredicted RBP12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 PSMD12O00232 456 aaPredicted RBP12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 CCL21O00585 134 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 PRAMEF4O60810 478 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 SLC25A12O75746 678 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 TBX6O95947 436 aaPredicted RBP12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 C1QAP02745 245 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 SP1P08047 785 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 C1GALT1C1LP0DN25 315 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 PRF1P14222 555 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 NCF1P14598 390 aaPredicted RBP12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 TPP2P29144 1249 aaPredicted RBP12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 SSTR1P30872 391 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 POU4F1Q01851 419 aa12.17□□□□□ -0.46
HMGCS1-205ENST00000508319 OC90Q02509 493 aaPredicted RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms