RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 MID1IP1Q9NPA3 183 aa9.55□□□□□ -0.88
NUP54-203ENST00000504173 TXLNGQ9NUQ3 528 aa9.55□□□□□ -0.88
NUP54-203ENST00000504173 ZNF490Q9ULM2 529 aaPredicted RBP9.55□□□□□ -0.88
NUP54-203ENST00000504173 RUVBL1Q9Y265 456 aaKnown RBP9.55□□□□□ -0.88
NUP54-203ENST00000504173 PCDHGA7Q9Y5G6 932 aa9.55□□□□□ -0.88
NUP54-203ENST00000504173 PCDHGA11Q9Y5H2 935 aa9.55□□□□□ -0.88
NUP54-203ENST00000504173 FITM1A5D6W6 292 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 UBFD1O14562 309 aaKnown RBP9.54□□□□□ -0.88
NUP54-203ENST00000504173 CLEC3AO75596 197 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 STK17BO94768 372 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 HSPA4LO95757 839 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 ENO1P06733 434 aaKnown RBP9.54□□□□□ -0.88
NUP54-203ENST00000504173 CAPN1P07384 714 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 CHRNGP07510 517 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 HBQ1P09105 142 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 FAM87AP0C7U9 286 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 SPTBP11277 2137 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 CHN1P15882 459 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 GRK2P25098 689 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 CD82P27701 267 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 ARSFP54793 590 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 STX3Q13277 289 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 PWP1Q13610 501 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 IGFBP7Q16270 282 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 NDUFA9Q16795 377 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 MUM1Q2TAK8 710 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 FAM214AQ32MH5 1076 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 ARL13AQ5H913 290 aaPredicted RBP9.54□□□□□ -0.88
NUP54-203ENST00000504173 MANEAQ5SRI9 462 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 FRG2Q64ET8 278 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 ADNP2Q6IQ32 1131 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 CUZD1Q86UP6 607 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 TRIM42Q8IWZ5 723 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 OR6Y1Q8NGX8 325 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 HUS1BQ8NHY5 278 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 ZCCHC10Q8TBK6 192 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 METTL6Q8TCB7 284 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 NT5CQ8TCD5 201 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 CREB3L4Q8TEY5 395 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 CLIP3Q96DZ5 547 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 FRG2BQ96QU4 278 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 SLC29A3Q9BZD2 475 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 SLC25A18Q9H1K4 315 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 RHBGQ9H310 441 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 ENAMQ9NRM1 1142 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 CUTCQ9NTM9 273 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 INTS9Q9NV88 658 aaKnown RBP9.54□□□□□ -0.88
NUP54-203ENST00000504173 DHCR7Q9UBM7 475 aaKnown RBP9.54□□□□□ -0.88
NUP54-203ENST00000504173 NDOR1Q9UHB4 597 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 ADGRE2Q9UHX3 823 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 ZNF225Q9UK10 706 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 SNX6Q9UNH7 406 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 PCDHB3Q9Y5E6 796 aa9.54□□□□□ -0.88
NUP54-203ENST00000504173 HIVEP1P15822 2718 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 URADA6NGE7 173 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 TMEM114B3SHH9 223 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 STMND1H3BQB6 276 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 MANBAO00462 879 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 LYPLA1O75608 230 aaPredicted RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 KRT6AP02538 564 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 KRT6BP04259 564 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 SERPINA6P08185 405 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 ALAS2P22557 587 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 CASRP41180 1078 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 PIK3CBP42338 1070 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 KRT6CP48668 564 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 ATP1A2P50993 1020 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 NEK2P51955 445 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 EMP3P54852 163 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 ABCE1P61221 599 aaKnown RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 STXBP1P61764 594 aaKnown RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 RPS13P62277 151 aaKnown RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 GALNT1Q10472 559 aaPredicted RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 SGO1Q5FBB7 561 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 TOR1AIP1Q5JTV8 583 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 TCHHL1Q5QJ38 904 aaPredicted RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 C10orf62Q5T681 223 aaPredicted RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 C1orf189Q5VU69 101 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 GARNL3Q5VVW2 1013 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 ATG16L1Q676U5 607 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 RHBDD2Q6NTF9 364 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 TMEM214Q6NUQ4 689 aaKnown RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 TTLL10Q6ZVT0 673 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 VN1R5Q7Z5H4 357 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 ZFAND4Q86XD8 727 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 ARFGAP2Q8N6H7 521 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 KCT2Q8NC54 265 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 GALNT6Q8NCL4 622 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 WDR20Q8TBZ3 569 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 PROKR1Q8TCW9 393 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 AGR3Q8TD06 166 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 ZNF473Q8WTR7 871 aaKnown RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 SELENOMQ8WWX9 145 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 EXTL1Q92935 676 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 MTFMTQ96DP5 389 aaKnown RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 C10orf90Q96M02 699 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 KCNA7Q96RP8 456 aa9.53□□□□□ -0.88
NUP54-203ENST00000504173 CCNL2Q96S94 520 aaPredicted RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 MTERF1Q99551 399 aaKnown RBP9.53□□□□□ -0.88
NUP54-203ENST00000504173 SLC6A16Q9GZN6 736 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms