RNA–Protein interactions for RNA: ENST00000498438.1

HOXD11-202, Transcript of homeobox D11, humanhuman

TSL 1 (best)

Gene HOXD11, Length 1,259 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11-202ENST00000498438 VPS4AQ9UN37 437 aa17.34■□□□□ 0.37
HOXD11-202ENST00000498438 DOPEY2Q9Y3R5 2298 aa17.34■□□□□ 0.37
HOXD11-202ENST00000498438 PCDHGA10Q9Y5H3 936 aa17.34■□□□□ 0.37
HOXD11-202ENST00000498438 C2P06681 752 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 UQCRHP07919 91 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 SMIM10L1P0DMW3 83 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 GSTM2P28161 218 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 AGTR2P50052 363 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 SERPINB8P50452 374 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 STXBP1P61764 594 aaKnown RBP17.33■□□□□ 0.36
HOXD11-202ENST00000498438 XKR6Q5GH73 641 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 LRRC70Q7Z2Q7 622 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 DNAJB14Q8TBM8 379 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 UBTD2Q8WUN7 234 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 SNRNP40Q96DI7 357 aaKnown RBP17.33■□□□□ 0.36
HOXD11-202ENST00000498438 TRIM44Q96DX7 344 aaPredicted RBP17.33■□□□□ 0.36
HOXD11-202ENST00000498438 C19orf60Q96EN9 201 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 SMIM10Q96HG1 83 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 CD244Q9BZW8 370 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 PITHD1Q9GZP4 211 aaPredicted RBP17.33■□□□□ 0.36
HOXD11-202ENST00000498438 NT5DC2Q9H857 520 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 ESPL1Q14674 2120 aa17.33■□□□□ 0.36
HOXD11-202ENST00000498438 USP9XQ93008 2570 aaPredicted RBP17.33■□□□□ 0.36
HOXD11-202ENST00000498438 WFS1O76024 890 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 ALDOAP04075 364 aaKnown RBP17.32■□□□□ 0.36
HOXD11-202ENST00000498438 ICAM2P13598 275 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 EPORP19235 508 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 CD22P20273 847 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 GNLYP22749 145 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 JAK1P23458 1154 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 HNRNPH1P31943 449 aaKnown RBP17.32■□□□□ 0.36
HOXD11-202ENST00000498438 GLRBP48167 497 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 AP2B1P63010 937 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 DOC2AQ14183 400 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 NSDHLQ15738 373 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 FAM83EQ2M2I3 478 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 ADNP2Q6IQ32 1131 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 VN1R5Q7Z5H4 357 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 CISD2Q8N5K1 135 aaKnown RBP17.32■□□□□ 0.36
HOXD11-202ENST00000498438 CEP112Q8N8E3 955 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 PLPP5Q8NEB5 264 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 SLC44A1Q8WWI5 657 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 GAL3ST3Q96A11 431 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 WDR34Q96EX3 536 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 PTCD3Q96EY7 689 aaKnown RBP17.32■□□□□ 0.36
HOXD11-202ENST00000498438 LMF1Q96S06 567 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 EFCAB11Q9BUY7 163 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 COL12A1Q99715 3063 aa17.32■□□□□ 0.36
HOXD11-202ENST00000498438 A0A096LPK6 155 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 A0A0G2JN53 185 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 ANKDD1BA6NHY2 528 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 SYCE1LA8MT33 242 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 MAGEB17A8MXT2 336 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 ERI3O43414 337 aaKnown RBP17.31■□□□□ 0.36
HOXD11-202ENST00000498438 B4GALT2O60909 372 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 CLEC3AO75596 197 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 INHBAP08476 426 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 RNH1P13489 461 aaKnown RBP17.31■□□□□ 0.36
HOXD11-202ENST00000498438 TYK2P29597 1187 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 CHIT1Q13231 466 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 ZNF169Q14929 603 aaPredicted RBP17.31■□□□□ 0.36
HOXD11-202ENST00000498438 BTBD16Q32M84 506 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 SFT2D3Q587I9 215 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 B3GNTL1Q67FW5 361 aaPredicted RBP17.31■□□□□ 0.36
HOXD11-202ENST00000498438 PLAG1Q6DJT9 500 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 RHEBL1Q8TAI7 183 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 MS4A6EQ96DS6 147 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 SEC16BQ96JE7 1060 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 PAFAH2Q99487 392 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 SLC29A3Q9BZD2 475 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 RHBGQ9H310 441 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 CLK4Q9HAZ1 481 aaKnown RBP17.31■□□□□ 0.36
HOXD11-202ENST00000498438 ASF1BQ9NVP2 202 aa17.31■□□□□ 0.36
HOXD11-202ENST00000498438 LRIT2A6NDA9 550 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 TCP11X1B4DZS4 312 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 PSMD12O00232 456 aaPredicted RBP17.3■□□□□ 0.36
HOXD11-202ENST00000498438 KLHL2O95198 593 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 TBX6O95947 436 aaPredicted RBP17.3■□□□□ 0.36
HOXD11-202ENST00000498438 MTHFD2P13995 350 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 BTN3A2P78410 334 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 ARG2P78540 354 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 IRF8Q02556 426 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 TLR1Q15399 786 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 TBCCQ15814 346 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 PAPD4Q6PIY7 484 aaKnown RBP17.3■□□□□ 0.36
HOXD11-202ENST00000498438 CA13Q8N1Q1 262 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 CATSPER1Q8NEC5 780 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 UHMK1Q8TAS1 419 aaKnown RBP17.3■□□□□ 0.36
HOXD11-202ENST00000498438 FAR2Q96K12 515 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 VPS11Q9H270 941 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 PLA2G3Q9NZ20 509 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 OPTCQ9UBM4 332 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 ZNF490Q9ULM2 529 aaPredicted RBP17.3■□□□□ 0.36
HOXD11-202ENST00000498438 NFU1Q9UMS0 254 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 NTNG1Q9Y2I2 539 aa17.3■□□□□ 0.36
HOXD11-202ENST00000498438 CCDC189A1A4V9 331 aa17.29■□□□□ 0.36
HOXD11-202ENST00000498438 DYTNA2CJ06 578 aa17.29■□□□□ 0.36
HOXD11-202ENST00000498438 CLEC18AA5D8T8 446 aa17.29■□□□□ 0.36
HOXD11-202ENST00000498438 FAM227AF5H4B4 570 aa17.29■□□□□ 0.36
HOXD11-202ENST00000498438 K7EPI3 171 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms