RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 DUSP26Q9BV47 211 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 WDR12Q9GZL7 423 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 SPNS1Q9H2V7 528 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 TMED5Q9Y3A6 229 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 PLXNA2O75051 1894 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 LRRK1Q38SD2 2015 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 NPC1O15118 1278 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 WBP4O75554 376 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 TGFB1P01137 390 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 AZGP1P25311 298 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 TGM4P49221 684 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 ARHGAP15Q53QZ3 475 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 STEAP3Q658P3 488 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 TECPR1Q7Z6L1 1165 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 CCDC103Q8IW40 242 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 UBE2J2Q8N2K1 259 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 MRPL43Q8N983 215 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 ZNF300Q96RE9 604 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 REEP1Q9H902 201 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 TPT1P8Q9HAU6 139 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 PCYT1BQ9Y5K3 369 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 ATG2BQ96BY7 2078 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 CKAP5Q14008 2032 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 SLC16A5O15375 505 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 CCNDBP1O95273 360 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 PRPH2P23942 346 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 MMP12P39900 470 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 PCYT1AP49585 367 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 MTAPQ13126 283 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 DHCR24Q15392 516 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 ZNF385BQ569K4 471 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 LIPJQ5W064 366 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 CELF2-AS1Q8N7Q2 184 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 C12orf76Q8N812 135 aaPredicted RBP15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 ZNF740Q8NDX6 193 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 IL17FQ96PD4 163 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 ACAT2Q9BWD1 397 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 BTBD2Q9BX70 525 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 SLIRPQ9GZT3 109 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 SPATA6Q9NWH7 488 aaPredicted RBP15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 MAFFQ9ULX9 164 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 MYO9BQ13459 2157 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 CATP04040 527 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 KDELR2P33947 212 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 SLC6A11P48066 632 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 TBPL1P62380 186 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 SHQ1Q6PI26 577 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 HMGN2P46Q86SG4 172 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 GALNT13Q8IUC8 556 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 ENTHD1Q8IYW4 607 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 OR9Q2Q8NGE9 314 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 ZNF480Q8WV37 535 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 RSPRY1Q96DX4 576 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 YIPF6Q96EC8 236 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 HHIPQ96QV1 700 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 CCM2Q9BSQ5 444 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 CENPOQ9BU64 300 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 OR51B5Q9H339 312 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 ERVK13-1Q9NX77 482 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 FZD4Q9ULV1 537 aa15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 FAM32AQ9Y421 112 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-210ENST00000494566 MTCL1Q9Y4B5 1905 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 DOCK9Q9BZ29 2069 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 SLC5A10A0PJK1 596 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 OTOL1A6NHN0 477 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 PRRT4C9JH25 899 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 H3BM21 787 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 KPNA5O15131 536 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 DGKGP49619 791 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 CRYBA2P53672 197 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 MMP21Q8N119 569 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 FEVQ99581 238 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 SORBS1Q9BX66 1292 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 CRISPLD2Q9H0B8 497 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 USE1Q9NZ43 259 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 TLL1O43897 1013 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 ARHGEF15O94989 841 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 CRATP43155 626 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 PRLHRP49683 370 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 GABARAPL2P60520 117 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 CAMK2GQ13555 558 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 DMC1Q14565 340 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 COX20Q5RI15 118 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 TRMT11Q7Z4G4 463 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 GATAD2AQ86YP4 633 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 APH1BQ8WW43 257 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 CIDECQ96AQ7 238 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 DMRTB1Q96MA1 342 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 APOL4Q9BPW4 351 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 MAGIXQ9H6Y5 334 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 EXOSC4Q9NPD3 245 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 SAMD4AQ9UPU9 718 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 RUVBL1Q9Y265 456 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 BOLA1Q9Y3E2 137 aa15.86■□□□□ 0.13
CCDC88B-210ENST00000494566 MGAT4DA6NG13 374 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 SCAMP2O15127 329 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 SLC22A1O15245 554 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 SPINT1O43278 529 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 MMP20O60882 483 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 CYP17A1P05093 508 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms