RNA–Protein interactions for RNA: ENST00000493161.1

SAMM50-204, Transcript of SAMM50 sorting and assembly machinery component, human

TSL 3

Gene SAMM50, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SAMM50-204	ENST00000493161	CCR8	P51685	355 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	IST1	P53990	364 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	NUP107	P57740	925 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	RAB8A	P61006	207 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	PMPCA	Q10713	525 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	GPS1	Q13098	491 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	C16orf47	Q6ZP98	133 aa	Predicted RBP	12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	QSOX2	Q6ZRP7	698 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	TMEM200A	Q86VY9	491 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	TXLNB	Q8N3L3	684 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	ZFP62	Q8NB50	900 aa	Predicted RBP	12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	POGLUT1	Q8NBL1	392 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	APCDD1L	Q8NCL9	501 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	OR4K1	Q8NGD4	311 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	UTP15	Q8TED0	518 aa	Known RBP	12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	ASB5	Q8WWX0	329 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	RND1	Q92730	232 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	SEC16B	Q96JE7	1060 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	TMUB1	Q9BVT8	246 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	FAM129A	Q9BZQ8	928 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	AICDA	Q9GZX7	198 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	RBSN	Q9H1K0	784 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	KLHL31	Q9H511	634 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	PLSCR2	Q9NRY7	297 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	C20orf96	Q9NUD7	363 aa	Predicted RBP	12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	ZNF223	Q9UK11	482 aa	Predicted RBP	12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	SPG11	Q96JI7	2443 aa		12.78	□□□□□ -0.36
SAMM50-204	ENST00000493161	TRBC2	A0A5B9	178 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	SDR42E2	A6NKP2	422 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	CDK2AP1	O14519	115 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	FCHO1	O14526	889 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	PRKN	O60260	465 aa	Predicted RBP	12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	C8G	P07360	202 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	HOXD4	P09016	255 aa	Predicted RBP	12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	CD99	P14209	185 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	PPP2R1B	P30154	601 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	CDKN2D	P55273	166 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	DHX9	Q08211	1270 aa	Known RBP	12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	PWP1	Q13610	501 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	TMEM211	Q6ICI0	200 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	TTC27	Q6P3X3	843 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	PAQR3	Q6TCH7	311 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	CYP4Z2P	Q8N1L4	340 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	ANKRD53	Q8N9V6	530 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	NT5C	Q8TCD5	201 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	SREK1	Q8WXA9	508 aa	Known RBP	12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	SNF8	Q96H20	258 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	ZNF559	Q9BR84	538 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	SARG	Q9BW04	601 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	TP63	Q9H3D4	680 aa	Predicted RBP	12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	LIN28A	Q9H9Z2	209 aa	Known RBP	12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	KCNJ16	Q9NPI9	418 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	PRDM9	Q9NQV7	894 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	IARS2	Q9NSE4	1012 aa	Known RBP	12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	KCMF1	Q9P0J7	381 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	ZFAT	Q9P243	1243 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	TRMT6	Q9UJA5	497 aa	Known RBP	12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	FBXW2	Q9UKT8	454 aa		12.77	□□□□□ -0.37
SAMM50-204	ENST00000493161	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161		A0A0G2JMM0	328 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161		A0A1W2PPB8	328 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161		A0A1W2PRS3	328 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	MAGEB16	A2A368	324 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	USP27X	A6NNY8	438 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	FAM166B	A8MTA8	275 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	KIR3DP1	A8MWS1	328 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	TGFBR3L	H3BV60	316 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	EIF3F	O00303	357 aa	Predicted RBP	12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	SLC16A5	O15375	505 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	ITGA10	O75578	1167 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	MYO1D	O94832	1006 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	CCND1	P24385	295 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	GABRB3	P28472	473 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	SARNP	P82979	210 aa	Known RBP	12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	HSP90AA5P	Q58FG0	334 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	RBM20	Q5T481	1227 aa	Known RBP	12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	UGT3A1	Q6NUS8	523 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	TMEM156	Q8N614	296 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	OR5M9	Q8NGP3	310 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	OR56A3	Q8NH54	315 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	NEIL2	Q969S2	332 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	LINGO1	Q96FE5	620 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	TSNARE1	Q96NA8	513 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	SERPINB12	Q96P63	405 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	HAUS8	Q9BT25	410 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	LIME1	Q9H400	295 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	PNPLA3	Q9NST1	481 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	ZFP69B	Q9UJL9	534 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	IKZF3	Q9UKT9	509 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	ZKSCAN5	Q9Y2L8	839 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	COMMD10	Q9Y6G5	202 aa		12.76	□□□□□ -0.37
SAMM50-204	ENST00000493161	TMEM200C	A6NKL6	621 aa		12.75	□□□□□ -0.37
SAMM50-204	ENST00000493161	FOXO6	A8MYZ6	492 aa		12.75	□□□□□ -0.37
SAMM50-204	ENST00000493161	NPIPA2	E9PIF3	369 aa		12.75	□□□□□ -0.37
SAMM50-204	ENST00000493161	NPIPA3	F8WFD2	350 aa		12.75	□□□□□ -0.37
SAMM50-204	ENST00000493161		G3V3Y1	287 aa		12.75	□□□□□ -0.37
SAMM50-204	ENST00000493161	KRT14	P02533	472 aa		12.75	□□□□□ -0.37
SAMM50-204	ENST00000493161	SMIM10L1	P0DMW3	83 aa		12.75	□□□□□ -0.37
SAMM50-204	ENST00000493161	RNH1	P13489	461 aa	Known RBP	12.75	□□□□□ -0.37
SAMM50-204	ENST00000493161	CXCR5	P32302	372 aa		12.75	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms