RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 IKZF3Q9UKT9 509 aa11.61□□□□□ -0.55
CPSF3-204ENST00000489403 PPP2R2CQ9Y2T4 447 aa11.61□□□□□ -0.55
CPSF3-204ENST00000489403 JRKLQ9Y4A0 524 aa11.61□□□□□ -0.55
CPSF3-204ENST00000489403 ASB1Q9Y576 335 aa11.61□□□□□ -0.55
CPSF3-204ENST00000489403 IGKV3D-11A0A0A0MRZ8 115 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 TCRBV16S1A1N1A0A5B0 115 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 C4orf51C9J302 202 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 DNALI1O14645 258 aaPredicted RBP11.6□□□□□ -0.55
CPSF3-204ENST00000489403 ADAM10O14672 748 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 PRMT3O60678 531 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 TTC4O95801 387 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 SMIM10L1P0DMW3 83 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 TRHRP34981 398 aaPredicted RBP11.6□□□□□ -0.55
CPSF3-204ENST00000489403 PTGER1P34995 402 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 AHRP35869 848 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 HNF4AP41235 474 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 CYB561P49447 251 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 ITGA8P53708 1063 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 RAB8AP61006 207 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 CSHL1Q14406 222 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 MSS51Q4VC12 460 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 HECTD2Q5U5R9 776 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 C3P1Q6ZMU1 363 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 GALNT7Q86SF2 657 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 IGDCC3Q8IVU1 814 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 TBC1D19Q8N5T2 526 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 GPATCH11Q8N954 259 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 NFAM1Q8NET5 270 aaPredicted RBP11.6□□□□□ -0.55
CPSF3-204ENST00000489403 PHF10Q8WUB8 498 aaKnown RBP11.6□□□□□ -0.55
CPSF3-204ENST00000489403 ATL1Q8WXF7 558 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 SMIM10Q96HG1 83 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 TSNARE1Q96NA8 513 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 DMRTA2Q96SC8 542 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 NAP1L3Q99457 506 aaPredicted RBP11.6□□□□□ -0.55
CPSF3-204ENST00000489403 TRIM54Q9BYV2 358 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 AICDAQ9GZX7 198 aa11.6□□□□□ -0.55
CPSF3-204ENST00000489403 TEP1Q99973 2627 aaKnown RBP11.6□□□□□ -0.55
CPSF3-204ENST00000489403 URADA6NGE7 173 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 A8MUA0 341 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 E9PLN8 166 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 FCHO1O14526 889 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 PRRG2O14669 202 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 NRDCO43847 1150 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 ENO2P09104 434 aaPredicted RBP11.59□□□□□ -0.55
CPSF3-204ENST00000489403 RNH1P13489 461 aaKnown RBP11.59□□□□□ -0.55
CPSF3-204ENST00000489403 SSTR2P30874 369 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 MEOX1P50221 254 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 HLCSP50747 726 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 KRTAP10-9P60411 292 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 PPP1R7Q15435 360 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 PPP1R3AQ16821 1122 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 TEDDM1Q5T9Z0 273 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 FAM45BPQ6NSW5 357 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 SBSNQ6UWP8 590 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 TMPRSS11BQ86T26 416 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 CEP97Q8IW35 865 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 CA13Q8N1Q1 262 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 ARMC10Q8N2F6 343 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 APCDD1LQ8NCL9 501 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 FAM45AQ8TCE6 357 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 TMEM125Q96AQ2 219 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 C14orf79Q96F83 325 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 VKORC1Q9BQB6 163 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 RHBGQ9H310 441 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 KLHL31Q9H511 634 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 PELI2Q9HAT8 420 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 PRDM9Q9NQV7 894 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 ASIC3Q9UHC3 531 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 ITGB1BP2Q9UKP3 347 aa11.59□□□□□ -0.55
CPSF3-204ENST00000489403 CORO1CQ9ULV4 474 aaPredicted RBP11.59□□□□□ -0.55
CPSF3-204ENST00000489403 CELSR1Q9NYQ6 3014 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 PSMD12O00232 456 aaPredicted RBP11.58□□□□□ -0.56
CPSF3-204ENST00000489403 TFECO14948 347 aaPredicted RBP11.58□□□□□ -0.56
CPSF3-204ENST00000489403 RFC3P40938 356 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 RBBP5Q15291 538 aaKnown RBP11.58□□□□□ -0.56
CPSF3-204ENST00000489403 BBS9Q3SYG4 887 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 TOR1AIP1Q5JTV8 583 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 TRMT10BQ6PF06 316 aaKnown RBP11.58□□□□□ -0.56
CPSF3-204ENST00000489403 NXPE4Q6UWF7 544 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 THOC6Q86W42 341 aaKnown RBP11.58□□□□□ -0.56
CPSF3-204ENST00000489403 SULF2Q8IWU5 870 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 POGLUT1Q8NBL1 392 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 ACBD4Q8NC06 268 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 TRPV3Q8NET8 790 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 ACTRT1Q8TDG2 376 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 CREB3L4Q8TEY5 395 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 PDLIM2Q96JY6 352 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 OSBPL9Q96SU4 736 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 AIF1LQ9BQI0 150 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 WDR83Q9BRX9 315 aaKnown RBP11.58□□□□□ -0.56
CPSF3-204ENST00000489403 NAT9Q9BTE0 207 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 DEFB126Q9BYW3 111 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 ENKD1Q9H0I2 346 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 CLK4Q9HAZ1 481 aaKnown RBP11.58□□□□□ -0.56
CPSF3-204ENST00000489403 PPANQ9NQ55 473 aaKnown RBP11.58□□□□□ -0.56
CPSF3-204ENST00000489403 ZFATQ9P243 1243 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 ZNF223Q9UK11 482 aaPredicted RBP11.58□□□□□ -0.56
CPSF3-204ENST00000489403 PPT2Q9UMR5 302 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 SLC22A14Q9Y267 594 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 KLF13Q9Y2Y9 288 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms