RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ATE1O95260 518 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 B3GALT4O96024 378 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 PCSK2P16519 638 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 HOXB9P17482 250 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-230ENST00000488543 IL10P22301 178 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 PKLRP30613 574 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 ACTR1BP42025 376 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 IST1P53990 364 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 ACTR1AP61163 376 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 ACSM2AQ08AH3 577 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 LAPTM5Q13571 262 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 ATP6AP1Q15904 470 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 RPE65Q16518 533 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 C10orf62Q5T681 223 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-230ENST00000488543 GPR107Q5VW38 600 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 ACSM2BQ68CK6 577 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 LCN8Q6JVE9 175 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 GPR141Q7Z602 305 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 NRROSQ86YC3 692 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 MAML2Q8IZL2 1156 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-230ENST00000488543 C12orf43Q96C57 262 aaKnown RBP11.64□□□□□ -0.55
HDAC6-230ENST00000488543 PELI2Q9HAT8 420 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 WASH6PQ9NQA3 447 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 SLC25A37Q9NYZ2 338 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 ACTR3BQ9P1U1 418 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 MAN2B2Q9Y2E5 1009 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 FANCMQ8IYD8 2048 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 HEATR5BQ9P2D3 2071 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 ELK4P28324 431 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 C21orf58P58505 322 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 BNIP2Q12982 314 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 MYBPC3Q14896 1274 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 FXNQ16595 210 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 MAPKAPK3Q16644 382 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 UGT8Q16880 541 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 BORAQ6PGQ7 559 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 TMEM26Q6ZUK4 368 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 C17orf64Q86WR6 236 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 SYT12Q8IV01 421 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 FAM86B1Q8N7N1 296 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 CADM4Q8NFZ8 388 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 JPH3Q8WXH2 748 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-230ENST00000488543 ZUFSPQ96AP4 578 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 SPACA7Q96KW9 195 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 RNF145Q96MT1 663 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 OR52E6Q96RD3 313 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 PAIP1Q9H074 479 aaKnown RBP11.64□□□□□ -0.55
HDAC6-230ENST00000488543 XKR8Q9H6D3 395 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 SLC6A13Q9NSD5 602 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 SIRT5Q9NXA8 310 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 UTS2RQ9UKP6 389 aa11.64□□□□□ -0.55
HDAC6-230ENST00000488543 A0A1W2PR77 199 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 POM121CA8CG34 1229 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 H0YJX3 145 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 TNFRSF10CO14798 259 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 PRMT3O60678 531 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 PFDN1O60925 122 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 KLHL18O94889 574 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 KCNH1O95259 989 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 S100A3P33764 101 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 POLR2IP36954 125 aaKnown RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 MLLT3P42568 568 aaPredicted RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 CSNK1EP49674 416 aaKnown RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 HIST2H2ACQ16777 129 aaPredicted RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 GTDC1Q4AE62 458 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 HIST2H2AA3Q6FI13 130 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 PTRH1Q86Y79 214 aaKnown RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 HS3ST5Q8IZT8 346 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 TMEM105Q8N8V8 129 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 ABHD11Q8NFV4 315 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 C1orf216Q8TAB5 229 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 PATE1Q8WXA2 126 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 GFM2Q969S9 779 aaKnown RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 CENPNQ96H22 339 aaPredicted RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 NPLQ9BXD5 320 aaPredicted RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 MVB12BQ9H7P6 319 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 ICKQ9UPZ9 632 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 GOLGA4Q13439 2230 aaKnown RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 SNRNP200O75643 2136 aaKnown RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 A0A1W2PPW3 197 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 AQP12BA6NM10 295 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 TBX6O95947 436 aaPredicted RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 PRPS1L1P21108 318 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 MYF6P23409 242 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 CD38P28907 300 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 PTPN6P29350 595 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 TIA1P31483 386 aaKnown RBP eCLIP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 PIK3CBP42338 1070 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 RAB28P51157 221 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 WNT3P56703 355 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 REEP5Q00765 189 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 CSTF1Q05048 431 aaKnown RBP11.63□□□□□ -0.55
HDAC6-230ENST00000488543 SLC36A3Q495N2 470 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 SPIN4Q56A73 249 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 TJAP1Q5JTD0 557 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 LRIF1Q5T3J3 769 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 GALNT18Q6P9A2 607 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 KLHL35Q6PF15 583 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 EGFL6Q8IUX8 553 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 AQP12AQ8IXF9 295 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms