RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 HPCAL1P37235 193 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 LIPEQ05469 1076 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 BIRC2Q13490 618 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 FXNQ16595 210 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 PGS1Q32NB8 556 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 DEPDC1Q5TB30 811 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 ZNF425Q6IV72 752 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 ZFP1Q6P2D0 407 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 PTRH1Q86Y79 214 aaKnown RBP13.55□□□□□ -0.24
CUX1-209ENST00000487284 MSRB3Q8IXL7 192 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 RBM12BQ8IXT5 1001 aaKnown RBP13.55□□□□□ -0.24
CUX1-209ENST00000487284 EID2Q8N6I1 236 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 AVL9Q8NBF6 648 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 WDR48Q8TAF3 677 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 GFM2Q969S9 779 aaKnown RBP13.55□□□□□ -0.24
CUX1-209ENST00000487284 ZUFSPQ96AP4 578 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 ANKRD27Q96NW4 1050 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 SARGQ9BW04 601 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 REXO4Q9GZR2 422 aaKnown RBP13.55□□□□□ -0.24
CUX1-209ENST00000487284 PAIP1Q9H074 479 aaKnown RBP13.55□□□□□ -0.24
CUX1-209ENST00000487284 SRMSQ9H3Y6 488 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 ALG2Q9H553 416 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 PRM3Q9NNZ6 103 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 PARD6AQ9NPB6 346 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 MYNNQ9NPC7 610 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 FAM120CQ9NX05 1096 aaKnown RBP13.55□□□□□ -0.24
CUX1-209ENST00000487284 VAPAQ9P0L0 249 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 MCM8Q9UJA3 840 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 ASCC3Q8N3C0 2202 aaKnown RBP13.55□□□□□ -0.24
CUX1-209ENST00000487284 ASXL3Q9C0F0 2248 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 ZNF292O60281 2723 aa13.55□□□□□ -0.24
CUX1-209ENST00000487284 ZFHX2Q9C0A1 2572 aaPredicted RBP13.55□□□□□ -0.24
CUX1-209ENST00000487284 BTN3A3O00478 584 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 OR1F1O43749 312 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 SCN2BO60939 215 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 KLHL18O94889 574 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 ZNF883P0CG24 379 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 COX7A2P14406 83 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 PTPN6P29350 595 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 PTDSS1P48651 473 aaKnown RBP13.54□□□□□ -0.24
CUX1-209ENST00000487284 WNT3P56703 355 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 OR4F3Q6IEY1 312 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 TTLQ8NG68 377 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 OR7A2PQ8NGA2 310 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 CDC26Q8NHZ8 85 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 FLVCR1-AS1Q8TAF5 88 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 SLC22A18Q96BI1 424 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 DPH7Q9BTV6 452 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 EDEM2Q9BV94 578 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 ZNF717Q9BY31 904 aaPredicted RBP13.54□□□□□ -0.24
CUX1-209ENST00000487284 DNAAF2Q9NVR5 837 aaKnown RBP13.54□□□□□ -0.24
CUX1-209ENST00000487284 SLC25A37Q9NYZ2 338 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 AHSPQ9NZD4 102 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 ATP6V1HQ9UI12 483 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 EXO1Q9UQ84 846 aaKnown RBP13.54□□□□□ -0.24
CUX1-209ENST00000487284 BTBD3Q9Y2F9 522 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 RNF215Q9Y6U7 377 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 RP1P56715 2156 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 LY6G6EA0A0G2JKS1 128 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 TCRBV3S1A0A5B6 114 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 FAM221BA6H8Z2 402 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 ISM1B1AKI9 464 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 SAP18O00422 153 aaKnown RBP13.54□□□□□ -0.24
CUX1-209ENST00000487284 PLPP1O14494 284 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 CDX4O14627 284 aaPredicted RBP13.54□□□□□ -0.24
CUX1-209ENST00000487284 NDUFS4O43181 175 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 LCMT2O60294 686 aaKnown RBP13.54□□□□□ -0.24
CUX1-209ENST00000487284 HTR1EP28566 365 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 AHRP35869 848 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 TRPC1P48995 793 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 SESN3P58005 492 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 CYP4F2P78329 520 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 MRPS22P82650 360 aaKnown RBP13.54□□□□□ -0.24
CUX1-209ENST00000487284 PLIN5Q00G26 463 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 PDE7AQ13946 482 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 SELPLGQ14242 412 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 KIR2DS3Q14952 304 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 CSRP2Q16527 193 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 HKDC1Q2TB90 917 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 RUNDC3AQ59EK9 446 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 KIAA1614Q5VZ46 1190 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 LCN8Q6JVE9 175 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 RNF111Q6ZNA4 994 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 LRRC74BQ6ZQY2 392 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 ADCK2Q7Z695 626 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 DHFR2Q86XF0 187 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 FAM20CQ8IXL6 584 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 OR10G6Q8NH81 332 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 CREB3L4Q8TEY5 395 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 C16orf78Q8WTQ4 265 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 NRG4Q8WWG1 115 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 COQ8BQ96D53 544 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 DUS3LQ96G46 650 aaKnown RBP13.54□□□□□ -0.24
CUX1-209ENST00000487284 SLC38A3Q99624 504 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 KCTD14Q9BQ13 255 aaPredicted RBP13.54□□□□□ -0.24
CUX1-209ENST00000487284 INPP5KQ9BT40 448 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 SLC6A13Q9NSD5 602 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 ACTR3BQ9P1U1 418 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 LRIT1Q9P2V4 623 aa13.54□□□□□ -0.24
CUX1-209ENST00000487284 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms