RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 A8MUA0 341 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 NCF1CA8MVU1 366 aaPredicted RBP20.22■□□□□ 0.83
USP40-215ENST00000484528 E7ESA3 106 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 CCDC188H7C350 402 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 NDC80O14777 642 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 PRMT3O60678 531 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 WDR47O94967 919 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 NCF1P14598 390 aaPredicted RBP20.22■□□□□ 0.83
USP40-215ENST00000484528 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.22■□□□□ 0.83
USP40-215ENST00000484528 TRPV3Q8NET8 790 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 CCDC120Q96HB5 630 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 RHOJQ9H4E5 214 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 CAB39LQ9H9S4 337 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 GPAMQ9HCL2 828 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 CACNA1CQ13936 2221 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 URADA6NGE7 173 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 PSMD12O00232 456 aaPredicted RBP20.21■□□□□ 0.83
USP40-215ENST00000484528 CCL21O00585 134 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 FANCGO15287 622 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 RNH1P13489 461 aaKnown RBP20.21■□□□□ 0.83
USP40-215ENST00000484528 CD46P15529 392 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 EEF1DP29692 281 aaKnown RBP20.21■□□□□ 0.83
USP40-215ENST00000484528 PAFAH1B1P43034 410 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 ZNF468Q5VIY5 522 aaPredicted RBP20.21■□□□□ 0.83
USP40-215ENST00000484528 NIPAL1Q6NVV3 410 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 QSOX2Q6ZRP7 698 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 GALNTL5Q7Z4T8 443 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 ADAMTSL2Q86TH1 951 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 SPATA6LQ8N4H0 392 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 ELP5Q8TE02 316 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 CREB3L4Q8TEY5 395 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 CCT6BQ92526 530 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 SCMH1Q96GD3 660 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 DPH5Q9H2P9 285 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 NECTIN3Q9NQS3 549 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 SUCOQ9UBS9 1254 aaKnown RBP20.21■□□□□ 0.83
USP40-215ENST00000484528 PYCARDQ9ULZ3 195 aa20.21■□□□□ 0.83
USP40-215ENST00000484528 SMIM10L1P0DMW3 83 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 CA7P43166 264 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 CDKL1Q00532 357 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 RBPJQ06330 500 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 SLBPQ14493 270 aaKnown RBP eCLIP20.2■□□□□ 0.82
USP40-215ENST00000484528 FBXO48Q5FWF7 155 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 RPS19BP1Q86WX3 136 aaKnown RBP20.2■□□□□ 0.82
USP40-215ENST00000484528 CA13Q8N1Q1 262 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 ITLN2Q8WWU7 325 aaPredicted RBP20.2■□□□□ 0.82
USP40-215ENST00000484528 ANKRD7Q92527 254 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 MARVELD3Q96A59 401 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 RHBDF1Q96CC6 855 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 SMIM10Q96HG1 83 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 LRFN1Q9P244 771 aa20.2■□□□□ 0.82
USP40-215ENST00000484528 MTO1Q9Y2Z2 717 aaKnown RBP20.2■□□□□ 0.82
USP40-215ENST00000484528 NCOA6Q14686 2063 aaPredicted RBP20.2■□□□□ 0.82
USP40-215ENST00000484528 IGKV3D-11A0A0A0MRZ8 115 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 SAGE2PA6NJ88 616 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 CXorf49A8MYA2 514 aaPredicted RBP20.19■□□□□ 0.82
USP40-215ENST00000484528 PHGDHO43175 533 aaKnown RBP20.19■□□□□ 0.82
USP40-215ENST00000484528 SLC19A2O60779 497 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 NEURL1O76050 574 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 SERPINA6P08185 405 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 C1GALT1C1LP0DN25 315 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 GRNP28799 593 aaKnown RBP20.19■□□□□ 0.82
USP40-215ENST00000484528 TPP2P29144 1249 aaPredicted RBP20.19■□□□□ 0.82
USP40-215ENST00000484528 SSTR1P30872 391 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 SLC6A12P48065 614 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 HNMTP50135 292 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 SLC12A2P55011 1212 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 BTN3A2P78410 334 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 ALDH6A1Q02252 535 aaKnown RBP20.19■□□□□ 0.82
USP40-215ENST00000484528 SP5Q6BEB4 398 aaPredicted RBP20.19■□□□□ 0.82
USP40-215ENST00000484528 SLCO4C1Q6ZQN7 724 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 TMEM178AQ8NBL3 297 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 FRMD6Q96NE9 622 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 MCMBPQ9BTE3 642 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 PRDM9Q9NQV7 894 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 NSMCE4AQ9NXX6 385 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 TINAGQ9UJW2 476 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 ENTPD4Q9Y227 616 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 PCDHGB6Q9Y5F9 930 aa20.19■□□□□ 0.82
USP40-215ENST00000484528 TCRBV16S1A1N1A0A5B0 115 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 NPIPA5E9PKD4 350 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 ZNHIT1O43257 154 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 SP1P08047 785 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 GNAZP19086 355 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 HNRNPH1P31943 449 aaKnown RBP20.18■□□□□ 0.82
USP40-215ENST00000484528 TGFBIQ15582 683 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 C3AR1Q16581 482 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 MAPKAPK3Q16644 382 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 PNPLA5Q7Z6Z6 429 aaPredicted RBP20.18■□□□□ 0.82
USP40-215ENST00000484528 SRRM1Q8IYB3 904 aaKnown RBP20.18■□□□□ 0.82
USP40-215ENST00000484528 LGI4Q8N135 537 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 PYROXD1Q8WU10 500 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 GAL3ST3Q96A11 431 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 ESAMQ96AP7 390 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 TMEM79Q9BSE2 394 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 POPDC3Q9HBV1 291 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 SAYSD1Q9NPB0 183 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 WWOXQ9NZC7 414 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 NPIPA1Q9UND3 350 aa20.18■□□□□ 0.82
USP40-215ENST00000484528 APCP25054 2843 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms