RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 CXXC5Q7LFL8 322 aaKnown RBP13.04□□□□□ -0.32
USP42-206ENST00000479544 KRT78Q8N1N4 520 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 PIAS4Q8N2W9 510 aaPredicted RBP13.04□□□□□ -0.32
USP42-206ENST00000479544 CSF3RQ99062 836 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 FBXO9Q9UK97 447 aaPredicted RBP13.04□□□□□ -0.32
USP42-206ENST00000479544 ADAMTS5Q9UNA0 930 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 PTHP01270 115 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 MAGEA12P43365 314 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 MAPKAPK2P49137 400 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 STARP49675 285 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 ANXA11P50995 505 aaKnown RBP13.04□□□□□ -0.32
USP42-206ENST00000479544 DAPP51397 102 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 SMIM11AP58511 58 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 CTBSQ01459 385 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 GRIK2Q13002 908 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 ZNF697Q5TEC3 545 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 FBXO46Q6PJ61 603 aaPredicted RBP13.04□□□□□ -0.32
USP42-206ENST00000479544 IQCHQ86VS3 1027 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 C3orf58Q8NDZ4 430 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 SH3RF2Q8TEC5 729 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 TSPAN18Q96SJ8 248 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 GINS4Q9BRT9 223 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 NLE1Q9NVX2 485 aaPredicted RBP13.04□□□□□ -0.32
USP42-206ENST00000479544 ITM2BQ9Y287 266 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 GPR52Q9Y2T5 361 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 PRAMEF11O60813 436 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 LRG1P02750 347 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 EBLN1P0CF75 366 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 NSG1P42857 185 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 RGS6P49758 472 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 SLC3A1Q07837 685 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 SUSD1Q6UWL2 747 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 ZNF366Q8N895 744 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 ATP6V1C2Q8NEY4 427 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 B3GNT7Q8NFL0 401 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 NEDD4LQ96PU5 975 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 MRPL15Q9P015 296 aaKnown RBP13.03□□□□□ -0.32
USP42-206ENST00000479544 NME7Q9Y5B8 376 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 CENPBD1B2RD01 187 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 K7ERQ8 282 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 HTR7P34969 479 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 SSR2P43308 183 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 AVPR1BP47901 424 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 PREPP48147 710 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 ISL1P61371 349 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 YBX1P67809 324 aaKnown RBP13.03□□□□□ -0.32
USP42-206ENST00000479544 HSF2Q03933 536 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 CCL14Q16627 93 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 UGT3A2Q3SY77 523 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 SLC35F1Q5T1Q4 408 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 NPAS3Q8IXF0 933 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 ADGRG2Q8IZP9 1017 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 NAGSQ8N159 534 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 CELF5Q8N6W0 485 aaKnown RBP13.03□□□□□ -0.32
USP42-206ENST00000479544 PCSK9Q8NBP7 692 aaKnown RBP13.03□□□□□ -0.32
USP42-206ENST00000479544 ASB12Q8WXK4 309 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 ABCG5Q9H222 651 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 EXTL2Q9UBQ6 330 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 ASB1Q9Y576 335 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 EVPLQ92817 2033 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 LOC105369274A0A096LPK9 316 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 TEX46H3BTG2 121 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 MPZL2O60487 215 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 GABARAPO95166 117 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 SAGP10523 405 aaPredicted RBP13.03□□□□□ -0.32
USP42-206ENST00000479544 TAS2R50P59544 299 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 ZNF33AQ06730 810 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 FAM110CQ1W6H9 321 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 CPZQ66K79 652 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 RAET1GQ6H3X3 334 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 OR4N4Q8N0Y3 316 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 ADAMTS16Q8TE57 1224 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 SLC35B4Q969S0 331 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 DHRS1Q96LJ7 313 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 IKZF5Q9H5V7 419 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 ENAMQ9NRM1 1142 aa13.03□□□□□ -0.32
USP42-206ENST00000479544 WNT9AO14904 365 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 ICMTO60725 284 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 RPS17P08708 135 aaKnown RBP13.02□□□□□ -0.32
USP42-206ENST00000479544 DRD5P21918 477 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 RYKP34925 604 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 MASP1P48740 699 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 CDH4P55283 916 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 RPS13P62277 151 aaKnown RBP13.02□□□□□ -0.32
USP42-206ENST00000479544 GINS1Q14691 196 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 LEXMQ3ZCV2 418 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 KIAA0319Q5VV43 1072 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 NADSYN1Q6IA69 706 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 MED27Q6P2C8 311 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 SNX20Q7Z614 316 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 UMODL1-AS1Q8N2C9 162 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 ARL14EPQ8N8R7 260 aaPredicted RBP13.02□□□□□ -0.32
USP42-206ENST00000479544 CD200R1Q8TD46 325 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 SCAMP4Q969E2 229 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 OR5M11Q96RB7 305 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 WRAP53Q9BUR4 548 aaKnown RBP13.02□□□□□ -0.32
USP42-206ENST00000479544 STARD7Q9NQZ5 370 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 STOML2Q9UJZ1 356 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 ENTPD4Q9Y227 616 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 SCN4AP35499 1836 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms