RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CDCA3Q99618 268 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 HNRNPABQ99729 332 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 NKX3-1Q99801 234 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF350Q9GZX5 532 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 LSG1Q9H089 658 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 RSPH9Q9H1X1 276 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 RAVER2Q9HCJ3 691 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 NDE1Q9NXR1 346 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 SLCO1C1Q9NYB5 712 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 CNIH4Q9P003 139 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 LEF1Q9UJU2 399 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 GMEB2Q9UKD1 530 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 PPP2R2CQ9Y2T4 447 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 HBS1LQ9Y450 684 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 KLK4Q9Y5K2 254 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 MUC19Q7Z5P9 8384 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 IGKV6D-21A0A0A0MT36 114 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 KBTBD13C9JR72 458 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC33A1O00400 549 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC16A8O95907 504 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 GH1P01241 217 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 ATP1B1P05026 303 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 DLATP10515 647 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 CD59P13987 128 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 HLA-FP30511 346 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 CAPGP40121 348 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 CETN2P41208 172 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 FRKP42685 505 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 OR3A1P47881 315 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 NPBWR1P48145 328 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 DNA2P51530 1060 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 ASIC1P78348 528 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 MYL7Q01449 175 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 GUCY2DQ02846 1103 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 ZFP36L1Q07352 338 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF674Q2M3X9 581 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 IQCCQ4KMZ1 466 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 GLRA4Q5JXX5 417 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 TTC27Q6P3X3 843 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 FUT10Q6P4F1 479 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC25A47Q6Q0C1 308 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 CPEB2Q7Z5Q1 589 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 GPR141Q7Z602 305 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 ANKRD46Q86W74 232 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 SNX32Q86XE0 403 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 RCOR2Q8IZ40 523 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 METTL4Q8N3J2 472 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF713Q8N859 430 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 OR1L3Q8NH93 324 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 APOBEC4Q8WW27 367 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 METTL21AQ8WXB1 218 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 TOMM40LQ969M1 308 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 RBM41Q96IZ5 413 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 C10orf90Q96M02 699 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 AGAP4Q96P64 663 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 PI4K2AQ9BTU6 479 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 C10orf88Q9H8K7 445 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 SRD5A3Q9H8P0 318 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 RNF121Q9H920 327 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 ABCB8Q9NUT2 735 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 CWC25Q9NXE8 425 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 GPR132Q9UNW8 380 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 PA2G4Q9UQ80 394 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 RUVBL2Q9Y230 463 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 SPATA31D1Q6ZQQ2 1576 aa2.51□□□□□ -2.01
CCDC88A-212ENST00000474059 TRAV18A0A075B6X5 111 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 ILVBLA1L0T0 632 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 LRRD1A4D1F6 860 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 ACOD1A6NK06 481 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 NPIPA3F8WFD2 350 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 H3BMM5 538 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 GOSR1O95249 250 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 SEC24AO95486 1093 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 SP9P0CG40 484 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC2A2P11168 524 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 ZBTB25P24278 435 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 LBX1P52954 281 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 RCN2Q14257 317 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 SMU1Q2TAY7 513 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 KBTBD12Q3ZCT8 623 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC10A5Q5PT55 438 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 OR4C11Q6IEV9 310 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF770Q6IQ21 691 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 KIF6Q6ZMV9 814 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 BTN2A1Q7KYR7 527 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 CCDC60Q8IWA6 550 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 CLYBLQ8N0X4 340 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 GBP7Q8N8V2 638 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC37A3Q8NCC5 494 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 KIAA0895Q8NCT3 520 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 LRRC15Q8TF66 581 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 UBLCP1Q8WVY7 318 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 RFT1Q96AA3 541 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 SNRNP40Q96DI7 357 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 C1orf147Q96MC9 270 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 NECTIN4Q96NY8 510 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 BTBD9Q96Q07 612 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 LPAR4Q99677 370 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 ATG101Q9BSB4 218 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms