RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	OR4D2	P58180	307 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	TAS2R50	P59544	299 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	BTN3A2	P78410	334 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	PHEX	P78562	749 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	ZNF33B	Q06732	778 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	CHIT1	Q13231	466 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	LAPTM5	Q13571	262 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	CRB2	Q5IJ48	1285 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	CDKL4	Q5MAI5	379 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	ABHD17B	Q5VST6	288 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	HIST2H2BC	Q6DN03	193 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	LRRC70	Q7Z2Q7	622 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	CISD2	Q8N5K1	135 aa	Known RBP	10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	ANKRD53	Q8N9V6	530 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	PDPR	Q8NCN5	879 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	OR5T3	Q8NGG3	340 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	GAL3ST3	Q96A11	431 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	TBC1D20	Q96BZ9	403 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	PTCD3	Q96EY7	689 aa	Known RBP	10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	PTCHD1	Q96NR3	888 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	OR1F2P	Q96R84	312 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	LPAR4	Q99677	370 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	MESP1	Q9BRJ9	268 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	TMEM79	Q9BSE2	394 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	MCMBP	Q9BTE3	642 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	EFCAB11	Q9BUY7	163 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	CD244	Q9BZW8	370 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	ACSS3	Q9H6R3	686 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	KCNK13	Q9HB14	408 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	AGPAT4	Q9NRZ5	378 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	ZGRF1	Q86YA3	2104 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	EXOC1L	A0A1B0GW35	172 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	CLEC18A	A5D8T8	446 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	TAPBP	O15533	448 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	B3GALT2	O43825	422 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PRMT3	O60678	531 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	F10	P00742	488 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	SERPINA7	P05543	415 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	C2	P06681	752 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	CYC1	P08574	325 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	EPB42	P16452	691 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	GSTM2	P28161	218 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	SLC6A12	P48065	614 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	CD97	P48960	835 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PLA2G16	P53816	162 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	SOX8	P57073	446 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	IRF9	Q00978	393 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	MFAP5	Q13361	173 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	DDX39B	Q13838	428 aa	Known RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	ZNF169	Q14929	603 aa	Predicted RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PFKFB4	Q16877	469 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PLEKHN1	Q494U1	663 aa	Predicted RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PRR30	Q53SZ7	412 aa	Predicted RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	SFT2D3	Q587I9	215 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	LGSN	Q5TDP6	509 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PAPD4	Q6PIY7	484 aa	Known RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	CLEC18B	Q6UXF7	455 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	SLCO4C1	Q6ZQN7	724 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	RIPOR1	Q6ZS17	1223 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	ANKRD37	Q7Z713	158 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PDSS2	Q86YH6	399 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	ARHGEF39	Q8N4T4	335 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	FAM26E	Q8N5C1	309 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	TEX9	Q8N6V9	391 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	CLEC18C	Q8NCF0	446 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	UTP15	Q8TED0	518 aa	Known RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PPP4R1	Q8TF05	950 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	UBE2E3	Q969T4	207 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	ATP6V1E2	Q96A05	226 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	MIB2	Q96AX9	1013 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	UBXN10	Q96LJ8	280 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PSMG3-AS1	Q96PY0	264 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PAFAH2	Q99487	392 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	CENPK	Q9BS16	269 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	SARG	Q9BW04	601 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	PITHD1	Q9GZP4	211 aa	Predicted RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	REXO4	Q9GZR2	422 aa	Known RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	ZNF700	Q9H0M5	742 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	KLHL31	Q9H511	634 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	ZBTB20	Q9HC78	741 aa	Predicted RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	NFU1	Q9UMS0	254 aa		10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	MRPS33	Q9Y291	106 aa	Known RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	COPG1	Q9Y678	874 aa	Known RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	RP1L1	Q8IWN7	2480 aa	Predicted RBP	10.87	□□□□□ -0.67
CPNE1-222	ENST00000473373	OR2W5	A6NFC9	320 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373		K7EPI3	171 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	CLDN4	O14493	209 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	SMIM24	O75264	130 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	SH3BGRL	O75368	114 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	SORBS2	O94875	1100 aa	Known RBP	10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	CELA2A	P08217	269 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	ITGAM	P11215	1152 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	GNLY	P22749	145 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	RAP1GDS1	P52306	607 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	SNRPN	P63162	240 aa	Known RBP	10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373		Q0VFX4	171 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	DLG1	Q12959	904 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	SLC13A2	Q13183	592 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	DOC2A	Q14183	400 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	RCN2	Q14257	317 aa		10.86	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms