RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 RSBN1Q5VWQ0 802 aaPredicted RBP11.19□□□□□ -0.62
NPHP4-204ENST00000460696 LRRTM4Q86VH4 590 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 CAMKK1Q8N5S9 505 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 TMEM145Q8NBT3 493 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 ADAMTS15Q8TE58 950 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 C1GALT1C1Q96EU7 318 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 FEVQ99581 238 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 CRISPLD2Q9H0B8 497 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 CLMPQ9H6B4 373 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 H3BMQ9 156 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 PSMD11O00231 422 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 PRMT3O60678 531 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 MFN2O95140 757 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 RB1P06400 928 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 C1SP09871 688 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 AMD1P17707 334 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 AZGP1P25311 298 aaKnown RBP11.19□□□□□ -0.62
NPHP4-204ENST00000460696 TIE1P35590 1138 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 MC1RQ01726 317 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 DCP2Q8IU60 420 aaKnown RBP11.19□□□□□ -0.62
NPHP4-204ENST00000460696 AQP11Q8NBQ7 271 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF548Q8NEK5 533 aaPredicted RBP11.19□□□□□ -0.62
NPHP4-204ENST00000460696 ZCCHC10Q8TBK6 192 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 NEIL2Q969S2 332 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 COG8Q96MW5 612 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 DCSTAMPQ9H295 470 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 WDR26Q9H7D7 661 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 SPATA7Q9P0W8 599 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 C5AR2Q9P296 337 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF225Q9UK10 706 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 BTBD3Q9Y2F9 522 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 ST14Q9Y5Y6 855 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 PIPSLA2A3N6 862 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 NUAK1O60285 661 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 ATE1O95260 518 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 RETP07949 1114 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 NR2F6P10588 404 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 DDX6P26196 483 aaKnown RBP eCLIP11.19□□□□□ -0.62
NPHP4-204ENST00000460696 CDKN2CP42773 168 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 CCR8P51685 355 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 RAB8AP61006 207 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 NFATC3Q12968 1075 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 KCNC3Q14003 757 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 PDGFRLQ15198 375 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 CCSAPQ6IQ19 270 aaPredicted RBP11.19□□□□□ -0.62
NPHP4-204ENST00000460696 KLHL35Q6PF15 583 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 CDK20Q8IZL9 346 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 CPXM2Q8N436 756 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 HPS1Q92902 700 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 F2RL3Q96RI0 385 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 INTS6Q9UL03 887 aaKnown RBP11.19□□□□□ -0.62
NPHP4-204ENST00000460696 CEP250Q9BV73 2442 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 RLFQ13129 1914 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 PLXNB2O15031 1838 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 ARID1BQ8NFD5 2236 aaPredicted RBP11.19□□□□□ -0.62
NPHP4-204ENST00000460696 H3BNC9 293 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 ERI3O43414 337 aaKnown RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 LATO43561 262 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 HPRP00739 348 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 C8orf89P0DMQ9 161 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 TLX1P31314 330 aaPredicted RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 MOGQ16653 247 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 DLEU7Q6UYE1 221 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 COMMD6Q7Z4G1 85 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 NUDT13Q86X67 352 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 TEX47Q8TBZ9 253 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 GEMIN6Q8WXD5 167 aaKnown RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 KAT2AQ92830 837 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 SLC35G5Q96KT7 338 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 TMEM245Q9H330 911 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 C3orf14Q9HBI5 128 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 TAS2R9Q9NYW1 312 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 SLC27A6Q9Y2P4 619 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 PSME4Q14997 1843 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 WDR81Q562E7 1941 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 FAM25AB3EWG3 89 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 FAM25CB3EWG5 89 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 FAM25GB3EWG6 89 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 WASH3PC4AMC7 463 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 C6P13671 934 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 NCBP2P52298 156 aaKnown RBP eCLIP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 SLC7A9P82251 487 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 NPRL3Q12980 569 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 KRR1Q13601 381 aaKnown RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 TMEM236Q5W0B7 351 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 OR2A12Q8NGT7 310 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 SPPL3Q8TCT6 385 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 HMGB4Q8WW32 186 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 C17orf62Q9BQA9 187 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 CFHR5Q9BXR6 569 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 GORASP2Q9H8Y8 452 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 DNAAF2Q9NVR5 837 aaKnown RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 ATP6V1HQ9UI12 483 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 FAM186AA6NE01 2351 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 TMEM265A0A087WTH1 108 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 EDDM13A0A1B0GTR0 161 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 LOC110117498-PIK3R3F6TDL0 507 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 SLC22A1O15245 554 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 ASNA1O43681 348 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 ALPLP05186 524 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms