RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ADAM30Q9UKF2 790 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 ADAMTS6Q9UKP5 1117 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 RGPD3A6NKT7 1758 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 KNL1Q8NG31 2342 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 TRBC2A0A5B9 178 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 KRT8P05787 483 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 CDK9P50750 372 aaKnown RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 CTBSQ01459 385 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 COL9A2Q14055 689 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 NANOGP8Q6NSW7 305 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 TRIM73Q86UV7 250 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 JAZF1Q86VZ6 243 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 OR8K5Q8NH50 307 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 OR5K1Q8NHB7 308 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 OR5P2Q8WZ92 322 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 RAB8BQ92930 207 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 MR1Q95460 341 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 RELTQ969Z4 430 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 NANOGQ9H9S0 305 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 NECTIN3Q9NQS3 549 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 TAS2R9Q9NYW1 312 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 C19orf25Q9UFG5 118 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 DMTF1Q9Y222 760 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 MFN2O95140 757 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 GABRB3P28472 473 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 NR1H2P55055 460 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 RPP38P78345 283 aaKnown RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 TARDBPQ13148 414 aaKnown RBP eCLIP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 OR4C11Q6IEV9 310 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 C6orf89Q6UWU4 347 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 LIMS2Q7Z4I7 341 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 DCP2Q8IU60 420 aaKnown RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 TMEFF1Q8IYR6 380 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 KAT2AQ92830 837 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 MYEOVQ96EZ4 313 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 TIMM29Q9BSF4 260 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 MRPS26Q9BYN8 205 aaKnown RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 ACTL8Q9H568 366 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 MARK1Q9P0L2 795 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 FTSJ1Q9UET6 329 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 RAB26Q9ULW5 256 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 LINC00854A0A1B0GVQ3 168 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 C1orf226A1L170 272 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 PRRT4C9JH25 899 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 NOBOXO60393 691 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 HEXBP07686 556 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 UQCRC2P22695 453 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 GRK6P43250 576 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ENPP2Q13822 863 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 DECR1Q16698 335 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 IER5LQ5T953 404 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 KLHDC8AQ8IYD2 350 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 OR7G3Q8NG95 312 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 MIEF2Q96C03 454 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 C6orf62Q9GZU0 229 aaPredicted RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 SLC6A17Q9H1V8 727 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 PELI2Q9HAT8 420 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 KCNK12Q9HB15 430 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 INTS6Q9UL03 887 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 EMCNQ9ULC0 261 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 TRIP12Q14669 1992 aaPredicted RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 A0A096LPI6 279 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 PEX12O00623 359 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 DFNA5O60443 496 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 RPS17P08708 135 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 RNH1P13489 461 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 CLDN8P56748 225 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 RAPSNQ13702 412 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 MED22Q15528 200 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 HSF5Q4G112 596 aaPredicted RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 CD300LGQ6UXG3 332 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 PLA2G15Q8NCC3 412 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 OR52E1Q8NGJ3 308 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 OR10Q1Q8NGQ4 319 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 NEIL2Q969S2 332 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF570Q96NI8 536 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 NUP205Q92621 2012 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 KIR2DS5A0A0G2JLQ3 304 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 A0A0G2JNG1 304 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 RIIAD1A6NNX1 92 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 KIR2DS3K7RE56 304 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 KPNA4O00629 521 aaPredicted RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 SCDO00767 359 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 UGDHO60701 494 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 FGF4P08620 206 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF24P17028 368 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 GRIK2Q13002 908 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 SMAD4Q13485 552 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 KIR2DS5Q14953 304 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 DEFB110Q30KQ9 67 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 KHDRBS2Q5VWX1 349 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 Q6ZNB5 142 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 PLPP6Q8IY26 295 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 SLC34A3Q8N130 599 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 TMEM156Q8N614 296 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 WDR60Q8WVS4 1066 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ASB11Q8WXH4 323 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ATOH8Q96SQ7 321 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms