RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 BRD9Q9H8M2 597 aa8.72□□□□□ -1.01
COPB1-202ENST00000439561 TMEM45AQ9NWC5 275 aa8.72□□□□□ -1.01
COPB1-202ENST00000439561 ATP6V1HQ9UI12 483 aa8.72□□□□□ -1.01
COPB1-202ENST00000439561 MRPS7Q9Y2R9 242 aaKnown RBP8.72□□□□□ -1.01
COPB1-202ENST00000439561 A0A1B0GVM2 712 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 GSAPA4D1B5 854 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 HMX3A6NHT5 357 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 C6orf47O95873 294 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 SERPIND1P05546 499 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 HLA-EP13747 358 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 SPAM1P38567 509 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 SGSHP51688 502 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 RPS26P62854 115 aaKnown RBP8.71□□□□□ -1.01
COPB1-202ENST00000439561 TSPAN33Q86UF1 283 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 NPAS3Q8IXF0 933 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 PEX5LQ8IYB4 626 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 IQCF1Q8N6M8 205 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 TP53I13Q8NBR0 393 aaPredicted RBP8.71□□□□□ -1.01
COPB1-202ENST00000439561 ATP6V1C2Q8NEY4 427 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 NACC2Q96BF6 587 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 C11orf54Q9H0W9 315 aaPredicted RBP8.71□□□□□ -1.01
COPB1-202ENST00000439561 ANKRA2Q9H9E1 313 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 IL26Q9NPH9 171 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 TMEM184CQ9NVA4 438 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 TRPC4Q9UBN4 977 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 MAPRE3Q9UPY8 281 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 SLC9A8Q9Y2E8 581 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 HCN4Q9Y3Q4 1203 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 PCDHB11Q9Y5F2 797 aa8.71□□□□□ -1.01
COPB1-202ENST00000439561 TMEM88BA6NKF7 163 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 I3L521 148 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 SEMA3DO95025 777 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 GPLD1P80108 840 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 C2orf80Q0P641 193 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 TARDBPQ13148 414 aaKnown RBP eCLIP8.71□□□□□ -1.02
COPB1-202ENST00000439561 TEAD4Q15561 434 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 SNAPC1Q16533 368 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 CLPPQ16740 277 aaPredicted RBP8.71□□□□□ -1.02
COPB1-202ENST00000439561 UGT8Q16880 541 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 HECTD3Q5T447 861 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 IER5LQ5T953 404 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 RRM2BQ7LG56 351 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 SHFQ7M4L6 423 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 LAPTM4BQ86VI4 370 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 RNF130Q86XS8 419 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 NLGN2Q8NFZ4 835 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 LRRC20Q8TCA0 184 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 GTF3C2Q8WUA4 911 aaPredicted RBP8.71□□□□□ -1.02
COPB1-202ENST00000439561 SLC7A6Q92536 515 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 CCDC120Q96HB5 630 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 OR2A14Q96R47 310 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 BTBD2Q9BX70 525 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 FAM83DQ9H4H8 585 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 RNF121Q9H920 327 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 LRFN2Q9ULH4 789 aa8.71□□□□□ -1.02
COPB1-202ENST00000439561 RUVBL1Q9Y265 456 aaKnown RBP8.71□□□□□ -1.02
COPB1-202ENST00000439561 ISM1B1AKI9 464 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 H3BQ06 376 aaPredicted RBP8.7□□□□□ -1.02
COPB1-202ENST00000439561 AKR7A2O43488 359 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 IGFBP1P08833 259 aaPredicted RBP8.7□□□□□ -1.02
COPB1-202ENST00000439561 NR2F6P10588 404 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 BMP1P13497 986 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 ATN1P54259 1190 aaPredicted RBP8.7□□□□□ -1.02
COPB1-202ENST00000439561 HOXC5Q00444 222 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 CDK6Q00534 326 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 TATDN3Q17R31 274 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 ATP13A5Q4VNC0 1218 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 TJAP1Q5JTD0 557 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 ATAT1Q5SQI0 421 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 TRIM40Q6P9F5 258 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 PAQR6Q6TCH4 344 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 PRSS55Q6UWB4 352 aaPredicted RBP8.7□□□□□ -1.02
COPB1-202ENST00000439561 TRIM46Q7Z4K8 759 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 CALHM3Q86XJ0 350 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 MEX3DQ86XN8 651 aaKnown RBP8.7□□□□□ -1.02
COPB1-202ENST00000439561 LMNTD1Q8N9Z9 388 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 PPCDCQ96CD2 204 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 ST6GAL2Q96JF0 529 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 ACAT2Q9BWD1 397 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 KATNBL1Q9H079 304 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 POLR2J3Q9H1A7 115 aaKnown RBP8.7□□□□□ -1.02
COPB1-202ENST00000439561 TRPM5Q9NZQ8 1165 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 NDUFAF4Q9P032 175 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 TBC1D24Q9ULP9 559 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 GSTK1Q9Y2Q3 226 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 CEP350Q5VT06 3117 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 A0A0U1RQF3 1178 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 CAPN5O15484 640 aaPredicted RBP8.7□□□□□ -1.02
COPB1-202ENST00000439561 TGFB1P01137 390 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 AMD1P17707 334 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 CSTF2P33240 577 aaKnown RBP eCLIP8.7□□□□□ -1.02
COPB1-202ENST00000439561 HMGCLP35914 325 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 MAPK12P53778 367 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 SMAD3P84022 425 aaKnown RBP8.7□□□□□ -1.02
COPB1-202ENST00000439561 PURAQ00577 322 aaKnown RBP8.7□□□□□ -1.02
COPB1-202ENST00000439561 RGNQ15493 299 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 ZSWIM7Q19AV6 140 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 LRIF1Q5T3J3 769 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 PLAG1Q6DJT9 500 aa8.7□□□□□ -1.02
COPB1-202ENST00000439561 USP45Q70EL2 814 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms