RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 OR4F21O95013 312 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 FAM107AO95990 144 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 RAB40ALP0C0E4 278 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 CDH1P12830 882 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 CMPK1P30085 196 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 RPL14P50914 215 aaKnown RBP11.58□□□□□ -0.56
PTPRF-208ENST00000437607 CHIT1Q13231 466 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 MRPL49Q13405 166 aaKnown RBP11.58□□□□□ -0.56
PTPRF-208ENST00000437607 KIR2DS3Q14952 304 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 NAA25Q14CX7 972 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 INPP5JQ15735 1006 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-208ENST00000437607 PDCD2Q16342 344 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-208ENST00000437607 ZXDCQ2QGD7 858 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-208ENST00000437607 GGTA1PQ4G0N0 100 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 XKR6Q5GH73 641 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 PAGE2BQ5JRK9 111 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 LETMD1Q6P1Q0 360 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 FAM198BQ6UWH4 519 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 SPATA21Q7Z572 469 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 ADCK2Q7Z695 626 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 LRRC56Q8IYG6 542 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-208ENST00000437607 CDYL2Q8N8U2 506 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 LMNTD1Q8N9Z9 388 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 OR4F6Q8NGB9 312 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 OR8K5Q8NH50 307 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 CDK15Q96Q40 435 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 OR4K3Q96R72 315 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 EFCAB11Q9BUY7 163 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 NTMT1Q9BV86 223 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 MFRPQ9BY79 579 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 INTS7Q9NVH2 962 aaKnown RBP11.58□□□□□ -0.56
PTPRF-208ENST00000437607 VTI1BQ9UEU0 232 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 TCFL5Q9UL49 500 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 ZNF451Q9Y4E5 1061 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 TEP1Q99973 2627 aaKnown RBP11.58□□□□□ -0.56
PTPRF-208ENST00000437607 APCP25054 2843 aa11.58□□□□□ -0.56
PTPRF-208ENST00000437607 POLEQ07864 2286 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 A0A1W2PPV9 198 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 A1L4Q6 167 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 SLC9B1P1A6NJY1 282 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 TMEM233B4DJY2 109 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 UBFD1O14562 309 aaKnown RBP11.57□□□□□ -0.56
PTPRF-208ENST00000437607 TGDSO95455 350 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 CLDN9O95484 217 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 UROSP10746 265 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 EPORP19235 508 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 POLR2CP19387 275 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-208ENST00000437607 PRDX3P30048 256 aaKnown RBP11.57□□□□□ -0.56
PTPRF-208ENST00000437607 ABATP80404 500 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 EIF2S3LQ2VIR3 472 aaKnown RBP11.57□□□□□ -0.56
PTPRF-208ENST00000437607 KANK2Q63ZY3 851 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 ICE2Q659A1 982 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 SLC6A19Q695T7 634 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 CLEC6AQ6EIG7 209 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 GRHL2Q6ISB3 625 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 CARFQ8N187 725 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 OR1L3Q8NH93 324 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 BCAS4Q8TDM0 211 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 TWIST2Q8WVJ9 160 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 CCT6BQ92526 530 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 NEIL2Q969S2 332 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 PTCD3Q96EY7 689 aaKnown RBP11.57□□□□□ -0.56
PTPRF-208ENST00000437607 THOC1Q96FV9 657 aaKnown RBP11.57□□□□□ -0.56
PTPRF-208ENST00000437607 NLNQ9BYT8 704 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 EHD1Q9H4M9 534 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 PELI2Q9HAT8 420 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 MRPS30Q9NP92 439 aaKnown RBP11.57□□□□□ -0.56
PTPRF-208ENST00000437607 PFDN4Q9NQP4 134 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 PNPOQ9NVS9 261 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 ACTR10Q9NZ32 417 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 KLHL14Q9P2G3 628 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 ZDHHC2Q9UIJ5 367 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 POMT2Q9UKY4 750 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 SNX7Q9UNH6 387 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 PCDHGB7Q9Y5F8 929 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 USH1CQ9Y6N9 552 aa11.57□□□□□ -0.56
PTPRF-208ENST00000437607 A0A0G2JND7 137 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 TRPC5OSA6NMA1 111 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 BTN3A3O00478 584 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 PPP6CO00743 305 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 FFAR3O14843 346 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 HDAC3O15379 428 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 GPR42O15529 346 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 FKBP9O95302 570 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 KRT6AP02538 564 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 KRT6BP04259 564 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 KLK3P07288 261 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-208ENST00000437607 ST6GAL1P15907 406 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 UGT2B7P16662 529 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 COL8A1P27658 744 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 PEBP1P30086 187 aaKnown RBP11.56□□□□□ -0.56
PTPRF-208ENST00000437607 HNF4AP41235 474 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 KRT6CP48668 564 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 CCR8P51685 355 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 PHEXP78562 749 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 IFT88Q13099 833 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 LAPTM5Q13571 262 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 SLBPQ14493 270 aaKnown RBP eCLIP11.56□□□□□ -0.56
PTPRF-208ENST00000437607 TBCCQ15814 346 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 TMTC4Q5T4D3 741 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms