RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 NEURL1O76050 574 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 ENO2P09104 434 aaPredicted RBP13.6□□□□□ -0.23
SDC1-204ENST00000429035 RNH1P13489 461 aaKnown RBP13.6□□□□□ -0.23
SDC1-204ENST00000429035 ELK3P41970 407 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 CYB561P49447 251 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 ITGA8P53708 1063 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 ZNF460Q14592 562 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 KRTCAP3Q53RY4 240 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 TEDDM1Q5T9Z0 273 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 TRMT10BQ6PF06 316 aaKnown RBP13.6□□□□□ -0.23
SDC1-204ENST00000429035 XKRXQ6PP77 449 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 QSOX2Q6ZRP7 698 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 THOC6Q86W42 341 aaKnown RBP13.6□□□□□ -0.23
SDC1-204ENST00000429035 LGI4Q8N135 537 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 ARMC2Q8NEN0 867 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 UTP15Q8TED0 518 aaKnown RBP13.6□□□□□ -0.23
SDC1-204ENST00000429035 PELI2Q9HAT8 420 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 ITGB1BP2Q9UKP3 347 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 IKZF3Q9UKT9 509 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 CORO1CQ9ULV4 474 aaPredicted RBP13.6□□□□□ -0.23
SDC1-204ENST00000429035 CTAGE15A4D2H0 777 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 ASNA1O43681 348 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 NME2P1O60361 137 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 CDC40O60508 579 aaKnown RBP eCLIP13.59□□□□□ -0.233e-6■■■□□ 17.2
SDC1-204ENST00000429035 CLDN14O95500 239 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 NME2P22392 152 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 RFC3P40938 356 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 MEOX1P50221 254 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 CTAGE6Q86UF2 777 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 ANKMY2Q8IV38 441 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 KLHL7Q8IXQ5 586 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 PDIK1LQ8N165 341 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 ANKRD53Q8N9V6 530 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 OR4K1Q8NGD4 311 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 ELP5Q8TE02 316 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 AGAP11Q8TF27 550 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 SREK1Q8WXA9 508 aaKnown RBP13.59□□□□□ -0.23
SDC1-204ENST00000429035 MTFMTQ96DP5 389 aaKnown RBP13.59□□□□□ -0.23
SDC1-204ENST00000429035 LURAP1Q96LR2 239 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 DEFB126Q9BYW3 111 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 KLHL31Q9H511 634 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 GPAMQ9HCL2 828 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 NECTIN3Q9NQS3 549 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 PNO1Q9NRX1 252 aaKnown RBP13.59□□□□□ -0.23
SDC1-204ENST00000429035 ZFATQ9P243 1243 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 FBXW2Q9UKT8 454 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 SNX12Q9UMY4 172 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 SLC22A14Q9Y267 594 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 MEMO1Q9Y316 297 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 VWA7Q9Y334 891 aa13.59□□□□□ -0.23
SDC1-204ENST00000429035 C4orf51C9J302 202 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 C19orf84I3L1E1 186 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 CDC7O00311 574 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 PRRG2O14669 202 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 MYO1DO94832 1006 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 WDR47O94967 919 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 ZNF37AP17032 561 aaPredicted RBP13.58□□□□□ -0.24
SDC1-204ENST00000429035 PTGER1P34995 402 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 AHRP35869 848 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 MLF1P58340 268 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 BTN3A2P78410 334 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 CDSNQ15517 529 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 NXPE4Q6UWF7 544 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 SBSNQ6UWP8 590 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 GALNT7Q86SF2 657 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 SIAH3Q8IW03 269 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.58□□□□□ -0.24
SDC1-204ENST00000429035 CA13Q8N1Q1 262 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 TRPV3Q8NET8 790 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 PDLIM2Q96JY6 352 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 FAR2Q96K12 515 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 CAPZA3Q96KX2 299 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 SARGQ9BW04 601 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 SLC6A16Q9GZN6 736 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 PRDM9Q9NQV7 894 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 PPT2Q9UMR5 302 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 ZNF835Q9Y2P0 537 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 KLF13Q9Y2Y9 288 aaPredicted RBP13.58□□□□□ -0.24
SDC1-204ENST00000429035 KCNE2Q9Y6J6 123 aa13.58□□□□□ -0.24
SDC1-204ENST00000429035 FAM95CA0A1B0GW59 222 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 TCRBV16S1A1N1A0A5B0 115 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 NCF1BA6NI72 391 aaPredicted RBP13.57□□□□□ -0.24
SDC1-204ENST00000429035 NCF1CA8MVU1 366 aaPredicted RBP13.57□□□□□ -0.24
SDC1-204ENST00000429035 TPOP07202 933 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 NCF1P14598 390 aaPredicted RBP13.57□□□□□ -0.24
SDC1-204ENST00000429035 GPR85P60893 370 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 SLBPQ14493 270 aaKnown RBP eCLIP13.57□□□□□ -0.24
SDC1-204ENST00000429035 PPP1R3AQ16821 1122 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 Q6ZPB1 254 aaPredicted RBP13.57□□□□□ -0.24
SDC1-204ENST00000429035 CAPN12Q6ZSI9 719 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 STRA8Q7Z7C7 330 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 CD163Q86VB7 1156 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 CEP97Q8IW35 865 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 CYP4Z2PQ8N1L4 340 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 TMEM156Q8N614 296 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 FAM47BQ8NA70 645 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 SDCCAG3Q96C92 435 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 WDR83Q9BRX9 315 aaKnown RBP13.57□□□□□ -0.24
SDC1-204ENST00000429035 TRIM51Q9BSJ1 452 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 TRIM8Q9BZR9 551 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms