RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CEP44Q9C0F1 390 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 RNF167Q9H6Y7 350 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 CD320Q9NPF0 282 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 ERVK-18Q9QC07 812 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 FBXW2Q9UKT8 454 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 SPAG17Q6Q759 2223 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 IGLV3-16A0A075B6K0 115 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 TMEM247A6NEH6 219 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 ZSCAN9O15535 394 aaPredicted RBP8.03□□□□□ -1.12
CD44-208ENST00000428726 C8GP07360 202 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 MYF6P23409 242 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 WNT3P56703 355 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 TUBA4AP68366 448 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 DAG1Q14118 895 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 SLC5A12Q1EHB4 618 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 WSCD2Q2TBF2 565 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 AHSA2Q719I0 299 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 TECPR1Q7Z6L1 1165 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 TMCO5AQ8N6Q1 288 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 ZNF513Q8N8E2 541 aaPredicted RBP8.03□□□□□ -1.12
CD44-208ENST00000428726 TNIP2Q8NFZ5 429 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 CXorf40AQ8TE69 158 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 TANKQ92844 425 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 SH3GL1Q99961 368 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 MIEF1Q9NQG6 463 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 PAK1IP1Q9NWT1 392 aaPredicted RBP8.03□□□□□ -1.12
CD44-208ENST00000428726 SAGE1Q9NXZ1 904 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 TRPC4Q9UBN4 977 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 EXO1Q9UQ84 846 aaKnown RBP8.03□□□□□ -1.12
CD44-208ENST00000428726 AP3M1Q9Y2T2 418 aa8.03□□□□□ -1.12
CD44-208ENST00000428726 KCNE1BA0A087WTH5 132 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 POM121BA6NF01 834 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 GFYI3L273 518 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 CASC3O15234 703 aaKnown RBP8.02□□□□□ -1.13
CD44-208ENST00000428726 KAT7O95251 611 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 KCNK5O95279 499 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 EML2O95834 649 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 PCSK2P16519 638 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 PSMB9P28065 219 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 RRM2P31350 389 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 SLC6A12P48065 614 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 CRISP3P54108 245 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 RAD23AP54725 363 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 CLDN8P56748 225 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 CAMK2GQ13555 558 aaPredicted RBP8.02□□□□□ -1.13
CD44-208ENST00000428726 CCDC85BQ15834 202 aaPredicted RBP8.02□□□□□ -1.13
CD44-208ENST00000428726 MPEG1Q2M385 716 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 PRSS36Q5K4E3 855 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 YAF2Q8IY57 180 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 ALDH16A1Q8IZ83 802 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 OR10G6Q8NH81 332 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 OR8D1Q8WZ84 308 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 LHPPQ9H008 270 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 KLHL31Q9H511 634 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 SYNPO2LQ9H987 977 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 PRSS16Q9NQE7 514 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 STARD5Q9NSY2 213 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 FAM118AQ9NWS6 357 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 TEX10Q9NXF1 929 aaPredicted RBP8.02□□□□□ -1.13
CD44-208ENST00000428726 A0A096LPI6 279 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 PIPSLA2A3N6 862 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 NPC1O15118 1278 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 TNRC18O15417 2968 aaPredicted RBP8.02□□□□□ -1.13
CD44-208ENST00000428726 LRRTM2O43300 516 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 NUAK1O60285 661 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 DNAJB6O75190 326 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 ALPLP05186 524 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 JUPP14923 745 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 C21orf33P30042 268 aaPredicted RBP8.02□□□□□ -1.13
CD44-208ENST00000428726 ALDH3B2P48448 385 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 HNMTP50135 292 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 ABRAXAS1Q6UWZ7 409 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 LRRC70Q7Z2Q7 622 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 ZNF554Q86TJ5 538 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 RIMKLAQ8IXN7 391 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 FAM9CQ8IZT9 166 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 PGBD3Q8N328 593 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 ZNF557Q8N988 423 aaPredicted RBP8.02□□□□□ -1.13
CD44-208ENST00000428726 TERB1Q8NA31 727 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 LEMD2Q8NC56 503 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 OR4E2Q8NGC2 313 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 DNAJB8Q8NHS0 232 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 ZCCHC10Q8TBK6 192 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 XAGE5Q8WWM1 108 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 RLN3Q8WXF3 142 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 PROX1Q92786 737 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 DTD2Q96FN9 168 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 PLEKHA8Q96JA3 519 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 CCDC115Q96NT0 180 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 IL4I1Q96RQ9 567 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 MYADMQ96S97 322 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 CSF3RQ99062 836 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 CPPED1Q9BRF8 314 aaPredicted RBP8.02□□□□□ -1.13
CD44-208ENST00000428726 SLC35A5Q9BS91 424 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 ZSCAN5AQ9BUG6 496 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 RBCK1Q9BYM8 510 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 EHD1Q9H4M9 534 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 MARCH7Q9H992 704 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 TIMMDC1Q9NPL8 285 aa8.02□□□□□ -1.13
CD44-208ENST00000428726 GPATCH2Q9NW75 528 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms