RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 MMP2P08253 660 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 HOXC4P09017 264 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PSG1P11464 419 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CD59P13987 128 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PRLRP16471 622 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ZNF30P17039 623 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 IGFBP2P18065 325 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TEAD1P28347 426 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 HNF1BP35680 557 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CD86P42081 329 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 GEMP55040 296 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PFN3P60673 137 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 RALGDSQ12967 914 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ZBTB17Q13105 803 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PRPSAP1Q14558 356 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 IHHQ14623 411 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CCNG2Q16589 344 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 WSCD2Q2TBF2 565 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 MIDNQ504T8 468 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 GLE1Q53GS7 698 aaKnown RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ANKRD20A2Q5SQ80 823 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ANKRD20A1Q5TYW2 823 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ANKRD20A3Q5VUR7 823 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 AADACL2Q6P093 401 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 LRIG3Q6UXM1 1119 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 GCNT7Q6ZNI0 430 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 Q6ZSR6 202 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TECPR1Q7Z6L1 1165 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ZNF567Q8N184 647 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 EXD3Q8N9H8 876 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 OR52N4Q8NGI2 321 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 C16orf52Q8NHV5 167 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PDCD6IPQ8WUM4 868 aaKnown RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 KCNJ9Q92806 393 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 LRRC45Q96CN5 670 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 RMDN1Q96DB5 314 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 FCRL4Q96PJ5 515 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TRIB3Q96RU7 358 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 LYSMD1Q96S90 227 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 WRAP53Q9BUR4 548 aaKnown RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 MLPHQ9BV36 600 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 SLC32A1Q9H598 525 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 MAGEE1Q9HCI5 957 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 THSD1Q9NS62 852 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 HOMER3Q9NSC5 361 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ARL15Q9NXU5 204 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 KLHL8Q9P2G9 620 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 BAG5Q9UL15 447 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CHKBQ9Y259 395 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ITM2BQ9Y287 266 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TMEM98Q9Y2Y6 226 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 AAR2Q9Y312 384 aaKnown RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 JRKLQ9Y4A0 524 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TTLL3Q9Y4R7 772 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 SLCO1B1Q9Y6L6 691 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 SDK1Q7Z5N4 2213 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 THADAQ6YHU6 1953 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 FAM186AA6NE01 2351 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 C5orf42Q9H799 3197 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PIEZO1Q92508 2521 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 UNC80Q8N2C7 3258 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 RIF1Q5UIP0 2472 aaKnown RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 EML5Q05BV3 1969 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TRBV5-3A0A0A0MS03 114 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TMEM272A0A1B0GTI8 110 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 RHODO00212 210 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 KCNN4O15554 427 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 FLRT2O43155 660 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 KIF5CO60282 957 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CEP104O60308 925 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 NDUFB8O95169 186 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 POLBP06746 335 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CEACAM1P13688 526 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CTPS1P17812 591 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TFEBP19484 476 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 HLA-DPA1P20036 260 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PTGER1P34995 402 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TRIM23P36406 574 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 NR4A2P43354 598 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TNNT3P45378 269 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 STC1P52823 247 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 THOP1P52888 689 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CLDN2P57739 230 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 HNRNPKP61978 463 aaKnown RBP eCLIP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 FZD2Q14332 565 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 GALNT3Q14435 633 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 IRF4Q15306 451 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PARP6Q2NL67 630 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 LRRC73Q5JTD7 316 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 HMBOX1Q6NT76 420 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 KDELC1Q6UW63 502 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 C4orf22Q6V702 233 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 HSD11B1LQ7Z5J1 315 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 DDIASQ8IXT1 998 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 KLHDC8BQ8IXV7 354 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PTGR2Q8N8N7 351 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 LPCAT1Q8NF37 534 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CEP70Q8NHQ1 597 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 SPATA22Q8NHS9 363 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 DTX3LQ8TDB6 740 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms