RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TMEM71Q6P5X7 295 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 PRSS42Q7Z5A4 293 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 KMT5CQ86Y97 462 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 MCATQ8IVS2 390 aaKnown RBP16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 TMEM132CQ8N3T6 1108 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 PCYOX1LQ8NBM8 494 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 ZCCHC10Q8TBK6 192 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 TSPEARQ8WU66 669 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 KLHL29Q96CT2 875 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 RCN3Q96D15 328 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 MS4A6EQ96DS6 147 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 PRPF18Q99633 342 aaKnown RBP16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 MACROD1Q9BQ69 325 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 TBCDQ9BTW9 1192 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 SORBS1Q9BX66 1292 aaKnown RBP16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 SLC6A16Q9GZN6 736 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 EFCAB1Q9HAE3 211 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 FANCEQ9HB96 536 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 NDE1Q9NXR1 346 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 PLCL2Q9UPR0 1127 aa16.32■□□□□ 0.2
CCDC28B-202ENST00000421922 ASXL3Q9C0F0 2248 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 IGHV5-51A0A0C4DH38 117 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 A0A0G2JN53 185 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 C9JVG2 144 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 RTCAO00442 366 aaKnown RBP16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 AIM2O14862 343 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 GYG2O15488 501 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 AKAP10O43572 662 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 GUCY1B2O75343 617 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 LMNAP02545 664 aaKnown RBP16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 GBAP04062 536 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 T-ENOLP0DO92 83 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 COX7A2P14406 83 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 CKMT2P17540 419 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 TACR1P25103 407 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 PTPN4P29074 926 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 GSTM5P46439 218 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 RAB8AP61006 207 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 NCALDP61601 193 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 RAE1P78406 368 aaKnown RBP16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 CCL7P80098 99 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 HSD11B2P80365 405 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 RCAN2Q14206 197 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 CLPPQ16740 277 aaPredicted RBP16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 ADPRMQ3LIE5 342 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 TIGD2Q4W5G0 525 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 MANEAQ5SRI9 462 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 REP15Q6BDI9 236 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 BLOC1S3Q6QNY0 202 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 R3HCC1LQ7Z5L2 792 aaKnown RBP16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 PROKR1Q8TCW9 393 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 GFM2Q969S9 779 aaKnown RBP16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 NUDT22Q9BRQ3 303 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 KLHL31Q9H511 634 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 FAM60AQ9NP50 221 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 SEMA4GQ9NTN9 838 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 NDUFAF1Q9Y375 327 aa16.31■□□□□ 0.2
CCDC28B-202ENST00000421922 DMDP11532 3685 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 COL5A1P20908 1838 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 LOC105369274A0A096LPK9 316 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 LOC102723532A0A0G2JNH3 316 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 A8MU76 341 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 MRASO14807 208 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 SRPX2O60687 465 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 TBX6O95947 436 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 IL6P05231 212 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 ZNF888P0CJ79 500 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 S100A3P33764 101 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 BSGP35613 385 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 HNRNPH2P55795 449 aaKnown RBP16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 SKP1P63208 163 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 CSRP2Q16527 193 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 NDUFA9Q16795 377 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 SPRED3Q2MJR0 410 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 VPS26BQ4G0F5 336 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 DNAL1Q4LDG9 190 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 TCTE1Q5JU00 501 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 ABHD17CQ6PCB6 329 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 IKBIPQ70UQ0 350 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 OR4N4Q8N0Y3 316 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 KRTCAP2Q8N6L1 136 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 KCT2Q8NC54 265 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 C16orf78Q8WTQ4 265 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 TM4SF19Q96DZ7 209 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 C11orf24Q96F05 449 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 TEX37Q96LM6 180 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 GFM1Q96RP9 751 aaKnown RBP16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 CHRNA10Q9GZZ6 450 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 CLMPQ9H6B4 373 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 MYNNQ9NPC7 610 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 LEF1Q9UJU2 399 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 ATXN7L1Q9ULK2 861 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 WBP11Q9Y2W2 641 aaKnown RBP16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 CACNA1AO00555 2505 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 VPS13AQ96RL7 3174 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 GPR179Q6PRD1 2367 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 GVINP1Q7Z2Y8 2422 aa16.3■□□□□ 0.2
CCDC28B-202ENST00000421922 ANKRD28O15084 1053 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 TOX3O15405 576 aaPredicted RBP16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 P2RX6O15547 441 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms