RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 KIF2BQ8N4N8 673 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 RAB42Q8N4Z0 105 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 DNAJB8Q8NHS0 232 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 MTFMTQ96DP5 389 aaKnown RBP12.15□□□□□ -0.46
LINC00339-202ENST00000416769 FRMD6Q96NE9 622 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 PRAP1Q96NZ9 151 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 PAFAH2Q99487 392 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 AARSD1Q9BTE6 412 aaKnown RBP12.15□□□□□ -0.46
LINC00339-202ENST00000416769 TUBB6Q9BUF5 446 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 TMEM109Q9BVC6 243 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 CCDC68Q9H2F9 335 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 RUBCNLQ9H714 662 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 SLC17A6Q9P2U8 582 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 CDC14AQ9UNH5 594 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 MEMO1Q9Y316 297 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 VWA7Q9Y334 891 aa12.15□□□□□ -0.46
LINC00339-202ENST00000416769 DNAJC13O75165 2243 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 ADAM10O14672 748 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 VPS26AO75436 327 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 RDH16O75452 317 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 FAM155BO75949 473 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 SYF2O95926 243 aaKnown RBP12.14□□□□□ -0.47
LINC00339-202ENST00000416769 ESRRAP11474 423 aaPredicted RBP12.14□□□□□ -0.47
LINC00339-202ENST00000416769 CNTFP26441 200 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 XCR1P46094 333 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 PRDX1Q06830 199 aaKnown RBP12.14□□□□□ -0.47
LINC00339-202ENST00000416769 IFFO1Q0D2I5 559 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 CASP8Q14790 479 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 FAM45BPQ6NSW5 357 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 ZNF549Q6P9A3 640 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 XKRXQ6PP77 449 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 LRIG3Q6UXM1 1119 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 MBOAT1Q6ZNC8 495 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 HDXQ7Z353 690 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 GALNTL5Q7Z4T8 443 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.14□□□□□ -0.47
LINC00339-202ENST00000416769 CROCCP2Q86T23 111 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 SPPL2CQ8IUH8 684 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 OR5T3Q8NGG3 340 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 OR51Q1Q8NH59 317 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 SUN3Q8TAQ9 357 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 FAM45AQ8TCE6 357 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 DCAKDQ8WVC6 231 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 RERGQ96A58 199 aaPredicted RBP12.14□□□□□ -0.47
LINC00339-202ENST00000416769 MRRFQ96E11 262 aaKnown RBP12.14□□□□□ -0.47
LINC00339-202ENST00000416769 MVB12AQ96EY5 273 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 SCMH1Q96GD3 660 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 VPS39Q96JC1 886 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 MAGED4Q96JG8 741 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 FOPNLQ96NB1 174 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 KCNK13Q9HB14 408 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 MTO1Q9Y2Z2 717 aaKnown RBP12.14□□□□□ -0.47
LINC00339-202ENST00000416769 ZNF407Q9C0G0 2248 aa12.14□□□□□ -0.47
LINC00339-202ENST00000416769 IQANK1A0A1B0GTG1 560 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 FEZF1A0PJY2 475 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 GABRR3A8MPY1 467 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 KPNA5O15131 536 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 CLDN14O95500 239 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 EZRP15311 586 aaKnown RBP12.13□□□□□ -0.47
LINC00339-202ENST00000416769 CHRM3P20309 590 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 IMPA1P29218 277 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 RFC3P40938 356 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 SKIV2L2P42285 1042 aaKnown RBP12.13□□□□□ -0.47
LINC00339-202ENST00000416769 CLCN7P51798 805 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 POU4F1Q01851 419 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 ALDH6A1Q02252 535 aaKnown RBP12.13□□□□□ -0.47
LINC00339-202ENST00000416769 RBPJQ06330 500 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 HECTD2Q5U5R9 776 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 GARNL3Q5VVW2 1013 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 PLAG1Q6DJT9 500 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 UGT3A1Q6NUS8 523 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 H3F3CQ6NXT2 135 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 Q6ZPB1 254 aaPredicted RBP12.13□□□□□ -0.47
LINC00339-202ENST00000416769 TAOK1Q7L7X3 1001 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 PIWIL4Q7Z3Z4 852 aaKnown RBP12.13□□□□□ -0.47
LINC00339-202ENST00000416769 CDH24Q86UP0 819 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 ZNF227Q86WZ6 799 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 CEP97Q8IW35 865 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 KCT2Q8NC54 265 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 OR2W6PQ8NHA6 318 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 AGAP11Q8TF27 550 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 ANKRD7Q92527 254 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 KCNJ9Q92806 393 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 ZIM3Q96PE6 472 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 GPR22Q99680 433 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 KLHL42Q9P2K6 505 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 PSMC3IPQ9P2W1 217 aaPredicted RBP12.13□□□□□ -0.47
LINC00339-202ENST00000416769 HRH3Q9Y5N1 445 aa12.13□□□□□ -0.47
LINC00339-202ENST00000416769 ACANP16112 2415 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 PRRC2AP48634 2157 aaKnown RBP12.12□□□□□ -0.47
LINC00339-202ENST00000416769 FAM95CA0A1B0GW59 222 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 TLDC2A0PJX2 215 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 ASPDHA6ND91 283 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 DYNC1I1O14576 645 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 PRPF4O43172 522 aaKnown RBP eCLIP12.12□□□□□ -0.47
LINC00339-202ENST00000416769 CDH16O75309 829 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 NEURL1O76050 574 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 SNRPAP09012 282 aaKnown RBP12.12□□□□□ -0.47
LINC00339-202ENST00000416769 ATP5DP30049 168 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 PTGER1P34995 402 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms